SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24203

Length: 620 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene24203 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-galactosidase n=1 Tax=Helianthus annuus RepID=Q84VQ7_HELAN	-	-	1.0e-24	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	alpha galactosidase	-	-	3.84891e-37	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	3.84891e-37	73%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, clan GH-D	IPR000111	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Glycoside hydrolase, family 27	IPR002241	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
174			90	10	0.90298
475			12	87	0.992554
478	14		85		0.993533
480			14	85	0.993533
481	85	14			0.993533
486	85			14	0.993533
488	14	85			0.993533
489		14		85	0.993533
491	14	85			0.993533
493		83	16		0.994512
550			33	66	0.997452
551		33		33	0.997753
552	33		66		0.997452
553	66	33			0.997452
554	33		33	33	0.997753
558		66		33	0.997452
559	66			33	0.997452
560	33		66		0.997452
562		33	33		0.997753
564	66			33	0.997452
567	33			66	0.997452
571	33	33	33		0.997753
572	66			33	0.997452
573	33	66			0.997452
574	33		33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain