SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24163

Length: 1320 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24163

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] sp\|Q9LHF1.1\|LRX4_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 4; Short=AtLRX4; Short=LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	75%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Histone H2B	IPR000558	-	-
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Flavodoxin, conserved site	IPR001226	-	-
Sma3	Ribosomal protein S3Ae	IPR001593	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Repetitive proline-rich cell wall protein repeat	IPR003883	-	-
Sma3	Extensin repeat	IPR006706	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Ribosomal protein S3Ae, conserved site	IPR018281	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Distance to subject end: 546 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 417 - 946

Fln protein: MRGRLKFPAMQEAVLAVLLVLGFILGLTAAQSDFSGRLSDVEGNYITHRQLLYYKDQNGDRGERVAVDPSFKFPNPKLKDAYIALQAWKKAIISDPLNITGNWLGPDVCNYTSVFCSAPPYNNSIQVVAGIDLNHADIAGYLPTELGLLTDLALFHINTNRFCGILPHSFKNMTQLYELDISNNRFAGPFPKVALHLPSLKYLDIRFNEFEGKLPTKLFDKDLDAIFVNNNRLHLEIPSNLGNSPVSVIVFANNNLGGCLPPSLGNMAATLDEIILMNSNLSGCLPSDITLLKNLTVFDVSFNKLVGPLPDSIGKMVRLEQLDVAHNMLSGNVPQSICGLPNLANFTYSYNFFTGEAPNCLALPRRGATFDDKRNCIPGRSAQRSRQQCSAFLSQPGVDCSASSCDPVRFSRHHHRF

Protein Length: 418

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTGTATTTATGCAACCCAAATGAAATATTGTGGGTTGAC_-_ATGAGAGGAAGGCTCAAATTTCCTGCAATGCAGGAAGCGGTTCTTGCTGTTCTGCTTGTTTTGGGCTTCATTCTTGGGCTTACAGCAGCTCAATCGGATTTTAGTGGCAGGTTGTCCGATGTTGAAGGCAACTACATTACCCACAGGCAGCTTCTGTATTACAAGGATCAGAATGGGGACAGAGGAGAAAGAGTAGCGGTCGATCCAAGCTTCAAGTTCCCAAATCCGAAGCTTAAAGATGCCTACATTGCTCTCCAGGCCTGGAAAAAGGCTATAATCTCAGACCCATTGAACATAACTGGGAACTGGTTAGGTCCTGATGTTTGTAACTACACTAGTGTGTTTTGTTCTGCTCCACCATACAACAACTCTATTCAGGTAGTAGCGGGCATTGATCTGAACCATGCAGACATTGCAGGGTATCTGCCTACGGAGCTTGGCTTGCTCACAGATCTGGCATTGTTCCATATCAATACTAACAGGTTCTGTGGTATTTTGCCTCACAGTTTCAAGAATATGACCCAGCTGTATGAGCTTGATATCAGTAATAACAGGTTTGCTGGGCCTTTCCCAAAGGTAGCTCTCCATCTGCCTTCACTGAAGTACCTGGACATCAGGTTCAATGAGTTCGAGGGAAAGCTGCCCACGAAGCTGTTTGACAAAGATCTTGATGCCATCTTTGTCAACAATAACAGGCTTCATCTTGAAATCCCTTCTAATCTTGGAAATTCTCCTGTTTCTGTTATTGTTTTCGCGAACAATAATCTCGGCGGATGCCTTCCTCCTAGTCTGGGAAACATGGCTGCCACTCTGGATGAGATCATACTCATGAATAGTAATCTGTCAGGCTGCCTGCCATCTGACATCACGCTCCTGAAAAACCTGACTGTCTTTGATGTGAGCTTCAATAAGCTAGTTGGGCCTCTGCCAGACAGCATTGGGAAGATGGTCAGATTGGAACAATTGGATGTTGCCCACAATATGTTAAGTGGCAATGTTCCCCAGAGCATCTGTGGGCTGCCCAATTTGGCAAATTTTACATACTCCTATAATTTCTTTACTGGAGAAGCACCCAATTGCCTGGCTCTTCCTAGAAGAGGAGCTACCTTCGATGACAAGAGGAATTGTATCCCTGGCAGGTCTGCTCAGAGGTCACGCCAGCAATGTTCTGCTTTCCTTTCTCAGCCTGGCGTAGATTGCTCTGCATCCTCCTGTGATCCTGTGAGGTTTTCCCGTCACCACCACCGGTTCGC

Fln Alignment:

Contig24163___LLVLGFILGLTAAQSDFSGR-LSDVE-GNYITHRQLLYYKDQNGDRGERVAVDPSFKFPNPKLKDAYIALQAWKKAIISDPLNITGNWLGP---DVCNYTSVFCSAPPYNNSIQVVAGIDLNHADIAGYLPTELGLLTDLALFHINTNRFCGILPHSFKNMTQLYELDIS-NNRFAGPFPKVALHLPSLKYLDIRFNEFEGKLPTKLFDK--DLDAIFVNNN-RLHLEIPSNLGN-SPVSVIVFANNNLGGCLPPSLGNMAATLDEIILMNSNLSGCLPSDITLLKNLTVFDVSFNKLVGPLPDSIGKMVRLEQLDVAHNMLSGNVPQSICGLPNLANFTYSYNFFTGEAP
C0PTA1_______________LMLLCFVI--MAAASDSSGKPYSDWENGFYDAHVMGGFSSDEAVLNGRNMQEEARVHERDLN------ALLAFKKAITYDPSRSLSNWTAQNSHNICSWYGVRCR--PHSRR---VVQIELSSSGLEGILSSSLGSLSFLKTLDLSANNLTGGIPPEFGRLKALRTLDLTFNEMLGGSVPKSLLNCTHLKWIGLANINLTGTIPTE-FGRLVELEHLDLSSNYYLSGSIPTSLGNCTSLSHLDLSNNSLSGHIPPTLGN-CISLSHLHLSENSLSGHIPPTLGNCTSLSHLDLSGNSLSGHIPPTLGKCISLSYIYLSGNSLSGHMPRTLGNLTQISHINLSFNNLSGVIP

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
429		16		83	0.994512
430	83			16	0.994512
432	66			16	0.988813
433	66		16	16	0.988813
436	60	20			0.99255
558		20		80	0.995493
561		20	80		0.995493
564	20		20		0.99255
565	80			20	0.995493
566		20		80	0.995493
567		20		80	0.995493
571		80	20		0.995493
574		80	20		0.995493
575	80			20	0.995493
579		16		83	0.994512
581		16		83	0.994512
582	16	83			0.994512
751			16	83	0.994512
753		16		83	0.994512
756	16	66	16		0.988813
758	66	33			1.0
759	16	83			0.994512
760	83			16	0.994512
763	83		16		0.994512
764	83		16		0.994512
766	71	14		14	0.984337
768			57	28	1.0
769		28	14	57	1.0
770	14			14	0.984337
771		14	14	71	0.984337
773		85	14		0.993533
775		14		85	0.993533
780	85	14			0.993533
781	85			14	0.993533
782	85		14		0.993533
785	14	85			0.993533
791	14			85	0.993533
809	11			88	0.923564
832	90			10	0.90298
835	90		10		0.90298
837	90		10		0.90298
839		10		90	0.90298
842		84		15	0.999986
844			84	15	0.999986
848		15	84		0.999986
850		15		69	0.999985
851			69	15	0.999985
853	15	84			0.999986
856		84	15		0.999986
859		83	16		0.999991
860		83		16	0.999991
861		16		83	0.999991
863		16	83		0.999991
866	16			83	0.999991
928		97	2		0.936149
952	95	1			0.999441
1274		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain