SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24157

Length: 1196 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24157

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aldehyde dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RKT3_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	cytosolic aldehyde dehydrogenase	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	Succinic semialdehyde dehydrogenase	IPR010102	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLF5

Fln msg: Distance to subject end: 217 aas, your sequence is shorter than subject: 286 - 500

Fln protein: MDSSNSGVGNGTDTDHIVSVKFTKLFIDGESVDAVSGKTFETLDPRTGDLITRVAEGDKEDVDLAVKAARKAFDKGPWPRMSGYERGRFLNKYADLVEQHIDELAALETLDNGKPLTLARAVDLPGCIQTLRYFAGAADKIHGETLKMGGPYHGYTLHEPIGVVGQIIPWNFPLVMFFIKIAPALACGCTVVIKPAEQTPLTALYCAHLAKEAGLPPGVLNVITGFGETAGAAISSHMDIDKVAFTGSTEIGRAIMVAAAQSNLKAVTLELGGKSPLIIMDDADIE

Protein Length: 287

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTCGTGTGAATGGAAAGTAATAGAGCTACAATTAGTGAATTTAACTGTCTGCTCGTGAGATTGTAAAGTAACGGAGGTAAAAGGAGCGTACTTAACAGTTTCTGTGTGCGATCGGAAAGTAACGGAGGTAAAAGGAGCGTACTTAACAGTTTCTGTGTGCGCCCCGCACCTAAAGAAAGTCTCGGTTCTGTCATTCAGTCATTTTCCTATAAATATGATATCAATGTATGTCATATCAATATATTCATTAAGCTCTCTGAGATTCCTCCATTGAAGTTGTGAAGGATTCAGGGAATTAGGGTTGCGCGAAAGA_-_ATGGATAGCTCAAATAGTGGGGTCGGTAATGGTACGGATACGGACCATATTGTGTCTGTGAAATTCACCAAACTGTTCATCGATGGAGAATCTGTCGATGCAGTTTCAGGGAAGACTTTTGAAACTTTGGATCCTCGAACAGGAGATTTGATAACACGTGTCGCAGAGGGTGATAAGGAGGATGTGGATTTGGCCGTGAAGGCCGCTCGGAAGGCTTTTGATAAGGGACCTTGGCCTCGAATGTCTGGCTATGAAAGGGGTCGCTTTCTGAACAAGTACGCCGATTTGGTAGAGCAGCACATAGATGAACTAGCAGCTCTTGAAACCCTAGATAATGGAAAACCATTGACCCTTGCTCGTGCTGTCGATTTGCCAGGGTGTATCCAGACTCTCAGATACTTTGCAGGAGCAGCTGATAAAATACACGGGGAAACATTAAAAATGGGAGGGCCATATCACGGCTATACATTGCATGAGCCCATTGGAGTGGTTGGTCAGATTATACCCTGGAACTTCCCACTGGTCATGTTTTTCATTAAAATCGCTCCCGCTTTGGCTTGTGGATGCACTGTAGTGATCAAACCTGCAGAACAAACTCCTCTAACTGCACTTTATTGCGCGCATTTGGCCAAGGAGGCTGGGCTTCCACCTGGTGTTCTTAACGTAATAACTGGTTTTGGAGAAACAGCTGGTGCTGCAATAAGCAGCCATATGGATATTGATAAGGTTGCCTTTACAGGGTCTACTGAAATAGGTCGGGCTATCATGGTGGCCGCTGCTCAGAGCAACTTGAAAGCTGTAACTCTTGAACTCGGGGGAAAATCTCCTTTGATTATCATGGATGACGCTGATATTGAG

Fln Alignment:

Contig24157___VSVKFTKLFIDGESVDAVSGKTFETLDPRTGDLITRVAEGDKEDVDLAVKAARKAFDKGPWPRMSGYERGRFLNKYADLVEQHIDELAALETLDNGKPLTLARAVDLPGCIQTLRYFAGAADKIHGETLKMGGPYHGYTLHEPIGVVGQIIPWNFPLVMFFIKIAPALACGCTVVIKPAEQTPLTALYCAHLAKEAGLPPGVLNVITGFGETAGAAISSHMDIDKVAFTGSTEIGRAIMVAAAQSNLKAVTLELGGKSPLIIMDDADIE
B8LLF5_______________VTVKYTKLFINGEFVDSVSGKTFETLDPRTGEAITRVSEAQKEDVDLAVKAARAAFDHGPWPRMSGFERGRILYKYADLVSQHGDELAALETFDNGKPLDMARILDIPYSVEVIRYNAGFADKIHGLTLKMSGQYQGYTLHEPIGVVGQMIPWNFPILTFFSKVSPALACGCTVVIKSAEQTPLTALYCAQLANEAGIPPGVLNVLSGFGETAGASISSHMDIDKISFTGSTQVGRLIMEAAAKSNLKPVTLEMGGKSPLIVMDDADVD

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
187		66		33	0.997452
189		66	33		0.997452
190		66		33	0.997452
197	66			33	0.997452
198	66		33		0.997452
199	66		33		0.997452
200		33	66		0.997452
201	66			33	0.997452
202	66		33		0.997452
203	66			33	0.997452
204		33	66		0.997452
205	33			66	0.997452
240		40		60	1.0
241	60		40		1.0
243		40	60		1.0
244	60		40		1.0
246	60		40		1.0
247	40			60	1.0
249	60	40			1.0
250	60			40	1.0
253			40	60	1.0
254	60	40			1.0
261	60	40			1.0
273	87		12		0.992554
275		12		87	0.992554
276	87		12		0.992554
277	87			12	0.992554
279	12	87			0.992554
280		12		87	0.992554
288	87	12			0.992554
295	10	89			0.999919
296	89		10		0.999919
297			10	89	0.999919
301	84	5	10		0.999846
302		10	89		0.999919
308	89	10			0.999919
309	89			10	0.999919
311		10	89		0.999919
313		10		89	0.999919
315	10	89			0.999919
983		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain