SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24140

Length: 1952 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene24140
GGAGGCAGGCTGGCAGGCAGATAAAGGGCAGGGCACGGGATGTGTACAGAAGGGTTGGAGTTGGTTTTTCGGATGCATACACATATAATTTGTCTCGGAGTTGGGGCAGCTAAGAGGGAAGGCAGCTTCGTGGCGGGTCCCTTTTCCACCTAATAGTATTATTATTTTATGCAATCTCGCCTCTCATACACTTCTTCTTGTCATTTGGTTGTTACTTAAGGTGGTAGAAGGAGAAGTGTGTACTAATTAAGGAAGGTAGGTCGGCTGGATTCTGTTTAGATGTGGTCGGATTGGTGTGAAAAAACTAGATTTTGAGGTTTTTTGTTTCCTGTATACCCATTGGGTTAAAGTCCGTCTCAATAGCCAGAAGTGACTTAAGACGCCCATGCTTTGCGCTGGCTTTGGCTGGCTGGGACTCTTGGTTTTATGGCGAGAAAGAGAAATTCGGGGTCAAATGATTGATTGGTTGATTGGAGAGAACAGATTCAATCAGAACCCATCTGGTGGATCCTTGCCTGCACATCGATTTATGAAGGCTTGCAAACATCAAGTGGGATGCAAACAACTTGTTGGCTCACTTAGATGAGATGAGGGATGCTAGCTGGATTGATGAAGCTGGTTACTGCGTGCTGGCGGCCCTCTGCCGACCACTATGTTCATATGGACGGAGACATTGTAGGTCGCCAAGACGGTCTTCTATGGTATAAAGATATTGGTCAGCATGAAGCTGGTGAATTCTCGATGGCTGTTGTTCAAGCCAATAGTCTTCTGGAAGATCAGAGTCAGCTTGAATCTGGTTCGCTGAGCGCAACAGAATCAGGTCCCCATGGCACTTTTGTAGGAATATATGATGGGCATGGAGGTCCTGAAACTGCCCGTTATATCAATAACCACCTTTTTCTGCACCTCCAGAAATTTGCAATGGAGCAGCAGGGGATGTCTGCTGATGTGATTCGAAAGGCCTTTTTAGCAACAGAAGAGGGGTTTTTGTCCATTGTTACAAAGGCATGGCCTACAAATCCACAGCTTGCAGCAGTTGGGTCTTGCTGTTTAGTAGGGTTGGTTTGTGGTGGGGTGCTTTATGTTGCCAATCTGGGAGATTCCCGTGCTGTTTTGGGAAAATTGGTCAAGTCTACAGGAGAAATTGCTGCCATGCAGTTGTCAATGGAGCATAATGCAGGTATTGAGGCTGTGAGGCAAGAGCTACAATCTTTGCATCCAGATGACCCACATATTGTAGTTCTAAAGCATGGGGTTTGGCGTGTGAAGGGTATCATTCAGGTTTCGAGATCTATTGGAGATGCATACTTGAAAAAGCCTGAGTTCAACCGAGAACCTTTATATCAAAAGTTCCGTCTTTCTGAACCTCTCCGTGGGCCTATCTTGACTGCTGAACCCTCAATTAATGTCTATACCCTTCAGCCTCATGATCACTTTATCATATTTGCATCAGATGGTCTTTGGGAACACTTGAGCAACCAGGAAGCAGTTGATATCGTTCATAGTCACCCACATGCGGGAAGTGCAAGGAGGCTTGTTAAAGCTGCTCTCCAAGAAGCAGCAAAGAAACGGGAGATGCGCTATTCAGATCTCAAGAAGATTGATCGTGGAGTCAGACGACATTTTCATGATGATATTACTGTCATTGTTGTGTTCTTAGACCATTCTTTAATCAGCAAATTCTCAAGTCGTGGCCCTACAACATCTATAAGAGGTGGTGGGATTACTGTACCTTCAAATTCACTTGCCCCTGATAGCACAAACTTAGATCATGTTGGCTGATACACTGCCAGATATCCTGTCATTAATGTGTGTGTCTGATTTGATCATTTAAGTCCAAGCCATGGCCCCATACTGTTTGTAAGAGAGCACTACTGCACCCTCAAACTAACATTCAGTGATACCAAATTCAGAGCATGATGGCTGATTCCTTGTGGGTGGAGGATAAACAG

Ace file of the UniGene sp_v2.0_unigene24140

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein phosphatase 2C (PP2C) [Fagus sylvatica]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	protein phosphatase	-	-	84%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA04

Fln msg:

Fln protein: MLAGLMKLVTACWRPSADHYVHMDGDIVGRQDGLLWYKDIGQHEAGEFSMAVVQANSLLEDQSQLESGSLSATESGPHGTFVGIYDGHGGPETARYINNHLFLHLQKFAMEQQGMSADVIRKAFLATEEGFLSIVTKAWPTNPQLAAVGSCCLVGLVCGGVLYVANLGDSRAVLGKLVKSTGEIAAMQLSMEHNAGIEAVRQELQSLHPDDPHIVVLKHGVWRVKGIIQVSRSIGDAYLKKPEFNREPLYQKFRLSEPLRGPILTAEPSINVYTLQPHDHFIIFASDGLWEHLSNQEAVDIVHSHPHAGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDHSLISKFSSRGPTTSIRGGGITVPSNSLAPDSTNLDHVG*

Protein Length: 397

Fln nts: GGAGGCAGGCTGGCAGGCAGATAAAGGGCAGGGCACGGGATGTGTACAGAAGGGTTGGAGTTGGTTTTTCGGATGCATACACATATAATTTGTCTCGGAGTTGGGGCAGCTAAGAGGGAAGGCAGCTTCGTGGCGGGTCCCTTTTCCACCTAATAGTATTATTATTTTATGCAATCTCGCCTCTCATACACTTCacCtgGaCActTGGgaGTcACtgAAGGaGGTAGAAGGAGAAGTGTGTACTAATTAAGGAAGGTAGGTCGGCTGGATTCTGTTTAGATGTGGTCGGATTGGTGTGAAAAAACTAGATTTTGAGGTTTTTTGTTTCCTGTATACCCATTGGGTTAAAGTCCGTCTCAATAGCCAGAAGTGACTTAAGACGCCCATGCTTTGCGCTGGCTTTGGCTGGCTGGGACTCTTGGTTTTATGGCGAGAAAGAGAAATTCGGGGTCAAATGATTGATTGGTTGATTGGAGAGAACAGATTCAATCAGAACCCATCTGGTGGATCCTTGCCTGCACATCGATTTATGAAGGCTTGCAAACATCAAGTGGGATGCAAACAACTTGTTGGCTCACTTAGATGAGATGAGGG_-_ATGCTAGCTGGATTGATGAAGCTGGTTACTGCGTGCTGGCGGCCCTCTGCCGACCACTATGTTCATATGGACGGAGACATTGTAGGTCGCCAAGACGGTCTTCTATGGTATAAAGATATTGGTCAGCATGAAGCTGGTGAATTCTCGATGGCTGTTGTTCAAGCCAATAGTCTTCTGGAAGATCAGAGTCAGCTTGAATCTGGTTCGCTGAGCGCAACAGAATCAGGTCCCCATGGCACTTTTGTAGGAATATATGATGGGCATGGAGGTCCTGAAACTGCCCGTTATATCAATAACCACCTTTTTCTGCACCTCCAGAAATTTGCAATGGAGCAGCAGGGGATGTCTGCTGATGTGATTCGAAAGGCCTTTTTAGCAACAGAAGAGGGGTTTTTGTCCATTGTTACAAAGGCATGGCCTACAAATCCACAGCTTGCAGCAGTTGGGTCTTGCTGTTTAGTAGGGTTGGTTTGTGGTGGGGTGCTTTATGTTGCCAATCTGGGAGATTCCCGTGCTGTTTTGGGAAAATTGGTCAAGTCTACAGGAGAAATTGCTGCCATGCAGTTGTCAATGGAGCATAATGCAGGTATTGAGGCTGTGAGGCAAGAGCTACAATCTTTGCATCCAGATGACCCACATATTGTAGTTCTAAAGCATGGGGTTTGGCGTGTGAAGGGTATCATTCAGGTTTCGAGATCTATTGGAGATGCATACTTGAAAAAGCCTGAGTTCAACCGAGAACCTTTATATCAAAAGTTCCGTCTTTCTGAACCTCTCCGTGGGCCTATCTTGACTGCTGAACCCTCAATTAATGTCTATACCCTTCAGCCTCATGATCACTTTATCATATTTGCATCAGATGGTCTTTGGGAACACTTGAGCAACCAGGAAGCAGTTGATATCGTTCATAGTCACCCACATGCGGGAAGTGCAAGGAGGCTTGTTAAAGCTGCTCTCCAAGAAGCAGCAAAGAAACGGGAGATGCGCTATTCAGATCTCAAGAAGATTGATCGTGGAGTCAGACGACATTTTCATGATGATATTACTGTCATTGTTGTGTTCTTAGACCATTCTTTAATCAGCAAATTCTCAAGTCGTGGCCCTACAACATCTATAAGAGGTGGTGGGATTACTGTACCTTCAAATTCACTTGCCCCTGATAGCACAAACTTAGATCATGTTGGCTGA___TACACTGCCAGATATCCTGTCATTAATGTGTGTGTCTGATTTGATCATTTAAGTCCAAGCCATGGCCCCATACTGTTTGTAAGAGAGCACTACTGCACCCTCAAACTAACATTCAGTGATACCAAATTCAGAGCATGATGGCTGATTCCTTGTGGGTGGAGGATAAACAG

Fln Alignment:

Contig24140___MLAGLMKLVTACWRPSADHYVHMDGDIVGR-QDGLLWYKDIGQHEAGEFSMAVVQANSLLEDQSQLESGSLSATESGPHGTFVGIYDGHGGPETARYINNHLFLHLQKFAMEQQGMSADVIRKAFLATEEGFLSIVTKAWPTNPQLAAVGSXXXXXXXXXXXXYVANLGDSRAVLGKLVKSTGEIAAMQLSMEHNAGIEAVRQELQSLHPDDPHIVVLKHGVWRVKGIIQVSRSIGDAYLKKPEFNREPLYQKFRLSEPLRGPILTAEPSINVYTLQPHDHFIIFASDGLWEHLSNQEAVDIVHSHPHAGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDHSLISKFSSRGPTTSIRGGGIT
D5AA04_______________MFGALMNLVSACWRP-IERYVQASADVVEEGQDGLLWFKDIGEHVAGEFSMAVAQANQLVEDQCQVEIG--------PFGTFVGVYDGHGGPDAARFINDHLFRHFQNFALEQRGMSAEVIRNAFLATEEGFLSLVTNAWPTKPQLAAVGSCCLVGLVYEKTLYVANLGDSRVVMGRLIRATGEIAAVQLSAEHNASMEAVRQELRSSHPDDPQIVVLKHDVWRVKGIIQVSRSIGDAYLKRPEFNREPLNPKFRLPEPLRRPVLTAEPSITTYTLQPHDRFLIFASDGLWEHLSNQEAVDIVHNHPHVGSAKRLIKAALHEAARKREMRYSDLKRIDRGVRRHFHDDITVIVVFLDHDLISKGSRRSLSQSVRGGGVS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
374		83	16		0.994512
375			16	83	0.994512
376			16	83	0.994512
690	33	66			1.0
739		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain