SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24127

Length: 2202 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene24127
ATGGGGGATCATATGAATGCCATGCAAATTTTGTGATGTGCCGAACATTGGGTGTTTGTGACGCCTTTTAAGAGGTGTGCGTGGGTGTGATAACATTGATAGAGTGATTGATTACTTGCATTTGATTATATGTGTTGATAGAGTGAGTGATTACTAGTTAGTTACATTACATTACATTTGATTTATGTTGTTGGTTATATGAGGAGAGGATGATGAAAGATTCCCAGGACGGGGTGACGCCGATGATAACTGGTACAGTAGCGAGCATAGGCATAGTGGGCATAGCCGCGGTGATCATATGGGGCATGGGCAGGGGTGTGAGCATAGGCATAATGGGCATAGCCGCGGTGATCATATGGGGCATCGGCAAGGGTGTTTTAGAGACAATTAAACAATGTGCTGCATCATTAATGTTAATGAATAGAAGAAATAAGATGAAACTACCACCAGGCCCTCCAGGATGGCCCATCGTAGGCAACCTAATGCAATTGGGGCCACTTCCCCACAGAGACCTGGCTGCGCTATGCAAAAAATACGGTCCTCTGGTGTATGTTCGCCTGGGGAAGGTGGACGCCATCACCACTGACGATCCGGAGATTATACGAGAAATCCTACAGAACCAGGATGAGGTGTTCAGTTCGAGGCCCAAGACGATGGCGGCGACTTACCTGGCCTACGGAAGCCGAGACGTGGCGTTCGCACCGCTTGGGACGCAGTGGAAACACATGAGAAGGATATGCATGGAGCATCTGCTGACAACCAGGCGATTGGATTCGTTTGTGCAGCACCGGAGAGAGGAGGCGGACTTCATGGTGCAGTGTGTACTGCGCGAGGCTCAGGCCGGTGACGGGAAGGTCATCAATCTGCGGGATCTGCTGGGGGCGTTCTCCATGAACAACGTGACCAGGATGATTCTGGGTAAGCGTTATTTCGGTGCGGCCGCCTCTGGTCCGGGCGAGGCAGCTCAGTTCATGGATATCACACATGAACTCTTCTCGTTGTTGGGGATTATTTATTTGGGCGATTATTTGCCCTTCTGGAGGTGGATCGATCCGTCTGCCTGCGAGAATCGAATGCGTGACGTGGAGAAGAGAATGGACGCGTTTCATACCAAGATACTGGAAGAACACCGACAACGACAACGACCACTACATTCAGATTTACATTCACATTTTGATTTTGTTGACGTGTTGCTGTCGTTGCCCGGAGGAGACGGGAAGAAGAGGCTGGACGACATTGAGATCAAGGCACTCATTCAGGACATGATCGCAGCTGCAACGGACACGTCATCCGTGACTAATGAGTGGGCAATGGCACAAGTGATAAAGAACCCTCGCATCCAGAGAAAAGTTCAGGCAGAACTGGACAGGGTGGTGGGGCAAGAGAGAATGGTGGAAGAGGGGGATCTGAACCAACTCCATTATCTTCGGTGCGTTGTTAGAGAAACCTTCAGAATGCACCCGGCAGGACCCTTCCTCATACCACACGAATCCGTGAAGCCCACAAAACTGGCAGGCTACGACATTCCAGAGAGATGCAGAATATTCATAAACACGTACGCCCTTGGACGTAACTCCAAATTATGGCCAGAAAGGGTTGATGAATTCTACCCAGAACGCCACATGCCAACCTCCACGGAAGATTGCCGCGTAGAAATTAGCCATGGCCCCGACTTCAAAATCCTTCCCTTCAGTGCCGGCAAGCGCAAGTGCCCCGGTGCTCCCTTGGGTACATGCTTCGTTCTGCTTGCCTTGGCTCGCCTCTTCCATTCCTTCCATTGGTATCCTGTTCCACCCACCACTGTCGATGACATCGATACTACCACTGAAGTGTATGGCATGACCATGCCCAGAGCACAGCCACTCCTTGCCATGGCTGAACCTCGACTGCCTCCTCACTTGTATACACCATAAATCTCCATTTTATCTTTACTCCCTTTCCTAAACTGCTTCACAACCCCTTAGTCACTTCACTATTCCCTTTTCCTAAACTGCTTCACACCCCATTAGTCACTCCACGCCAGGCATTTATTGTCTTATAAAACTTAATATTGCGATTCAATTGCTCTCCTAAGTTCTACATGCGTTTTCGATGTTATAAAACTTAATATTTGTGATTGAATTTCTGCCATGGATTTATTGTCTTATAAAACTTAGTATTGTGATTCAATTGCTCTCCTAAGTTCTACATGCGTTTAAAACC

Ace file of the UniGene sp_v2.0_unigene24127

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cytochrome P450 [Petunia x hybrida]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	cytochrome p450	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on paired donors, with incorporation or reduction of molecular oxygen, With NADH or NADPH as one donor, and incorporation of one atom of oxygen.	EC:1.14.13.-	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	78%
Blast2go	Histidine metabolism	00340	78%
Blast2go	Phenylalanine metabolism	00360	78%
Blast2go	Chlorocyclohexane and chlorobenzene degradation	00361	78%
Blast2go	Bisphenol degradation	00363	78%
Blast2go	Tryptophan metabolism	00380	78%
Blast2go	Cyanoamino acid metabolism	00460	78%
Blast2go	Xylene degradation	00622	78%
Blast2go	Toluene degradation	00623	78%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	78%
Blast2go	Chloroalkane and chloroalkene degradation	00625	78%
Blast2go	Naphthalene degradation	00626	78%
Blast2go	Aminobenzoate degradation	00627	78%
Blast2go	Styrene degradation	00643	78%
Blast2go	Limonene and pinene degradation	00903	78%
Blast2go	Diterpenoid biosynthesis	00904	78%
Blast2go	Brassinosteroid biosynthesis	00905	78%
Blast2go	Carotenoid biosynthesis	00906	78%
Blast2go	Phenylpropanoid biosynthesis	00940	78%
Blast2go	Flavonoid biosynthesis	00941	78%
Blast2go	Isoflavonoid biosynthesis	00943	78%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	78%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	78%
Blast2go	Glucosinolate biosynthesis	00966	78%
Blast2go	Biosynthesis of type II polyketide products	01057	78%
Blast2go	Biosynthesis of phenylpropanoids	01061	78%
Blast2go	Biosynthesis of terpenoids and steroids	01062	78%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	78%
Blast2go	Biosynthesis of plant hormones	01070	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	Identity
Blast2go	medium-chain fatty acid biosynthetic process	GO:0051792	Biological Process	78%
Blast2go	sporopollenin biosynthetic process	GO:0080110	Biological Process	78%
Blast2go	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	GO:0016709	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV76

Fln msg: your sequence is longer than subject: 568 - 514

Fln protein: MMKDSQDGVTPMITGTVASIGIVGIAAVIIWGMGRGVSIGIMGIAAVIIWGIGKGVLETIKQCAASLMLMNRRNKMKLPPGPPGWPIVGNLMQLGPLPHRDLAALCKKYGPLVYVRLGKVDAITTDDPEIIREILQNQDEVFSSRPKTMAATYLAYGSRDVAFAPLGTQWKHMRRICMEHLLTTRRLDSFVQHRREEADFMVQCVLREAQAGDGKVINLRDLLGAFSMNNVTRMILGKRYFGAAASGPGEAAQFMDITHELFSLLGIIYLGDYLPFWRWIDPSACENRMRDVEKRMDAFHTKILEEHRQRQRPLHSDLHSHFDFVDVLLSLPGGDGKKRLDDIEIKALIQDMIAAATDTSSVTNEWAMAQVIKNPRIQRKVQAELDRVVGQERMVEEGDLNQLHYLRCVVRETFRMHPAGPFLIPHESVKPTKLAGYDIPERCRIFINTYALGRNSKLWPERVDEFYPERHMPTSTEDCRVEISHGPDFKILPFSAGKRKCPGAPLGTCFVLLALARLFHSFHWYPVPPTTVDDIDTTTEVYGMTMPRAQPLLAMAEPRLPPHLYTP*

Protein Length: 569

Fln nts: ATGGGGGATCATATGAATGCCATGCAAATTTTGTGATGTGCCGAACATTGGGTGTTTGTGACGCCTTTTAAGAGGTGTGCGTGGGTGTGATAACATTGATAGAGTGATTGATTACTTGCATTTGATTATATGTGTTGATAGAGTGAGTGATTACTAGTTAGTTACATTACATTACATTTGATTTATGTTGTTGGTTATATGAGGAGAGG_-_ATGATGAAAGATTCCCAGGACGGGGTGACGCCGATGATAACTGGTACAGTAGCGAGCATAGGCATAGTGGGCATAGCCGCGGTGATCATATGGGGCATGGGCAGGGGTGTGAGCATAGGCATAATGGGCATAGCCGCGGTGATCATATGGGGCATCGGCAAGGGTGTTTTAGAGACAATTAAACAATGTGCTGCATCATTAATGTTAATGAATAGAAGAAATAAGATGAAACTACCACCAGGCCCTCCAGGATGGCCCATCGTAGGCAACCTAATGCAATTGGGGCCACTTCCCCACAGAGACCTGGCTGCGCTATGCAAAAAATACGGTCCTCTGGTGTATGTTCGCCTGGGGAAGGTGGACGCCATCACCACTGACGATCCGGAGATTATACGAGAAATCCTACAGAACCAGGATGAGGTGTTCAGTTCGAGGCCCAAGACGATGGCGGCGACTTACCTGGCCTACGGAAGCCGAGACGTGGCGTTCGCACCGCTTGGGACGCAGTGGAAACACATGAGAAGGATATGCATGGAGCATCTGCTGACAACCAGGCGATTGGATTCGTTTGTGCAGCACCGGAGAGAGGAGGCGGACTTCATGGTGCAGTGTGTACTGCGCGAGGCTCAGGCCGGTGACGGGAAGGTCATCAATCTGCGGGATCTGCTGGGGGCGTTCTCCATGAACAACGTGACCAGGATGATTCTGGGTAAGCGTTATTTCGGTGCGGCCGCCTCTGGTCCGGGCGAGGCAGCTCAGTTCATGGATATCACACATGAACTCTTCTCGTTGTTGGGGATTATTTATTTGGGCGATTATTTGCCCTTCTGGAGGTGGATCGATCCGTCTGCCTGCGAGAATCGAATGCGTGACGTGGAGAAGAGAATGGACGCGTTTCATACCAAGATACTGGAAGAACACCGACAACGACAACGACCACTACATTCAGATTTACATTCACATTTTGATTTTGTTGACGTGTTGCTGTCGTTGCCCGGAGGAGACGGGAAGAAGAGGCTGGACGACATTGAGATCAAGGCACTCATTCAGGACATGATCGCAGCTGCAACGGACACGTCATCCGTGACTAATGAGTGGGCAATGGCACAAGTGATAAAGAACCCTCGCATCCAGAGAAAAGTTCAGGCAGAACTGGACAGGGTGGTGGGGCAAGAGAGAATGGTGGAAGAGGGGGATCTGAACCAACTCCATTATCTTCGGTGCGTTGTTAGAGAAACCTTCAGAATGCACCCGGCAGGACCCTTCCTCATACCACACGAATCCGTGAAGCCCACAAAACTGGCAGGCTACGACATTCCAGAGAGATGCAGAATATTCATAAACACGTACGCCCTTGGACGTAACTCCAAATTATGGCCAGAAAGGGTTGATGAATTCTACCCAGAACGCCACATGCCAACCTCCACGGAAGATTGCCGCGTAGAAATTAGCCATGGCCCCGACTTCAAAATCCTTCCCTTCAGTGCCGGCAAGCGCAAGTGCCCCGGTGCTCCCTTGGGTACATGCTTCGTTCTGCTTGCCTTGGCTCGCCTCTTCCATTCCTTCCATTGGTATCCTGTTCCACCCACCACTGTCGATGACATCGATACTACCACTGAAGTGTATGGCATGACCATGCCCAGAGCACAGCCACTCCTTGCCATGGCTGAACCTCGACTGCCTCCTCACTTGTATACACCATAA___ATCTCCATTTTATCTTTACTCCCTTTCCTAAACTGCTTCACAACCCCTTAGTCACTTCACTATTCCCTTTTCCTAAACTGCTTCACACCCCATTAGTCACTCCACGCCAGGCATTTATTGTCTTATAAAACTTAATATTGCGATTCAATTGCTCTCCTAAGTTCTACATGCGTTTTCGATGTTATAAAACTTAATATTTGTGATTGAATTTCTGCCATGGATTTATTGTCTTATAAAACTTAGTATTGTGATTCAATTGCTCTCCTAAGTTCTACATGCGTTTAAAACC

Fln Alignment:

Contig24127___LMLMNRRNKMKLPPGPPGWPIVGNLMQLGPLPHRDLAALCKKYGPLVYVRLGKVDAITTDDPEIIREILQNQDEVFSSRPKTMAATYLAYGSRDVAFAPLGTQWKHMRRICMEHLLTTRRLDSFVQHRREEADFMVQCVLREAQAGDGKVINLRDLLGAFSMNNVTRMILGKRYFGAAASGPGEAAQFMDITHELFSLLGIIYLGDYLPFWRWIDPSACENRMRDVEKRMDAFHTKILEEHRQRQRPLHSDLHSHFDFVDVLLSLPGGDGKKRLDDIEIKALIQDMIAAATDTSSVTNEWAMAQVIKNPRIQRKVQAELDRVVGQERMVEEGDLNQLHYLRCVVRETFRMHPAGPFLIPHESVKPTKLAGYDIPERCRIFINTYALGRNSKLWPERVDEFYPERHMPTSTEDCRVEISHGPDFKILPFSAGKRKCPGAPLGTCFVLLALARLFHSFHWYXXXXXXXXXXXXXXXXYGMTMPRAQPLLAMAEPRLPPHLY
A9NV76_______________LIYMRLRPSVKLPPGPRAWPIIGNLNLMGKLPHRSLDRLSKTYGPLMYIRLGSIPCVVASSAEMAREFLQTHDLTFSSRPQVASGKYTTYNYSDITWSPYGDYFRLARKVCLMELFSAKRLESFEYIRVEEVARMLGSVFETCQR--GLPVEIRKETYGVSNNIISRMALGRRYFDKEAGNMMRLEELKEMLEEFFLLNGVFNIVDFIPWLGWLDLQGYVGRMKKLSERLDVFLEEVVEEHDRRRKGVENYVAK--DMMDVLLK-QADDPQLNLSRIKVKAFTLDIIAGGTETSATLVEWGLSELLKKPEMLERATKELDRVVGRERWVEEKDMGGLEYVQWIVKETMRLHPVAPLLVPHLSTQRCRIAGYDIPANTRVFVNVWSIGRDDQSW-ENPNEFRPER-FKGSTVDVM-----GRDYELLPFGSGRRMCPGNSLGLKVVQIALANLIHGFQW-KLPDGQSPKDLDMGEIFGLSTSKTCPLVAMARPRLPSHLY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1690		2		97	0.977151
1895		96		3	0.993591
2107	96		3		0.991164
2118		2		97	0.960269

SSRs (tot: 1)

Start position	End position	Sequence	Length
162	178	TTACA TTACA TTACA TT	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain