SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24078

Length: 1849 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene24078 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cytochrome P450, family 703, subfamily A, polypeptide 2 [Arabidopsis thaliana] gb\|AAF97323.1\|AC023628_4 Putative cytochrome P450 [Arabidopsis thaliana] gb\|AAY25435.1\| At1g01280 [Arabidopsis thaliana] gb\|AEE27265.1\| cytochrome P450, family 703, subfamily A	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Oryza punctata (Red rice).	-	-	55%
Blast2go	cytochrome p450	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on paired donors, with incorporation or reduction of molecular oxygen, With NADH or NADPH as one donor, and incorporation of one atom of oxygen.	EC:1.14.13.-	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	78%
Blast2go	Histidine metabolism	00340	78%
Blast2go	Phenylalanine metabolism	00360	78%
Blast2go	Chlorocyclohexane and chlorobenzene degradation	00361	78%
Blast2go	Bisphenol degradation	00363	78%
Blast2go	Tryptophan metabolism	00380	78%
Blast2go	Cyanoamino acid metabolism	00460	78%
Blast2go	Xylene degradation	00622	78%
Blast2go	Toluene degradation	00623	78%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	78%
Blast2go	Chloroalkane and chloroalkene degradation	00625	78%
Blast2go	Naphthalene degradation	00626	78%
Blast2go	Aminobenzoate degradation	00627	78%
Blast2go	Styrene degradation	00643	78%
Blast2go	Limonene and pinene degradation	00903	78%
Blast2go	Diterpenoid biosynthesis	00904	78%
Blast2go	Brassinosteroid biosynthesis	00905	78%
Blast2go	Carotenoid biosynthesis	00906	78%
Blast2go	Phenylpropanoid biosynthesis	00940	78%
Blast2go	Flavonoid biosynthesis	00941	78%
Blast2go	Isoflavonoid biosynthesis	00943	78%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	78%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	78%
Blast2go	Glucosinolate biosynthesis	00966	78%
Blast2go	Biosynthesis of type II polyketide products	01057	78%
Blast2go	Biosynthesis of phenylpropanoids	01061	78%
Blast2go	Biosynthesis of terpenoids and steroids	01062	78%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	78%
Blast2go	Biosynthesis of plant hormones	01070	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	Identity
Blast2go	medium-chain fatty acid biosynthetic process	GO:0051792	Biological Process	78%
Blast2go	sporopollenin biosynthetic process	GO:0080110	Biological Process	78%
Blast2go	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	GO:0016709	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F1BLA9

Fln msg: Overlapping hits, possible frame ERROR between 753 and 750,

Fln protein: MMKDSQDGVTPMITGTVASIGVSIAAVIIWGIGKGVLETIKQCAASLMLMNRRNKMKLPPGPPGWPIVGNLMQLGPLPHRDLAALCKKYGPLVYVRLGKVFSSRPKTMAATYLAYGSRDVAFAPLGTQWKHMRRICMEHLLTTRRLDSFVQHRREEADFMVQCVLREAQAGDGKVINLRDLxxxFSMNNVTRMILGKRYFGAAASGPGEAAQFMDITHELFSLLGIIYLGDYLPFWRWIDPSACENRMRDVEKRMDAFHTKILEEHRQRQRPLHSDLHSHFDFVDVLLSLPGGDGKKRLDDIEIKALIQDMIAAATDTSSVTNEWAMAQVIKNPRIQRKVQAELDRVVGQERMVEEGDLNQLHYLRCVVRETFRMHPAGPFLIPHESVKPTKLAGYDIPERCRIFINTYALGRNSKLWPERVDEFYPERHMPTSTEDCRVEISHGPDFKILPFSAGKRRCPGAPLGTCFVLLALARLFHSFHWYPVPPTTVDDIDTTTEVYGMTMPRAQPLLAMAEPRLPPHLYTP*

Protein Length: 528

Fln nts: ATGGGATATGAATGCCATGCAAATTTTGTGATGTGCCGAACATTGGGTGTTTGTGACGCCTTTTAAGAGGTGTGCGTGGGTGTGATAACATTGATAGAGTGATTGATTACTTGCATTTGATTATATGTGTTGATAGAGTGAGTGATTACTAGTTAGTTACATTACATTACATTTGATTTATGTTGTTGGTTATATGAGGAGAGG_-_ATGATGAAAGATTCCCAGGACGGGGTGACGCCGATGATAACTGGTACAGTAGCGAGCATAGGTGTGAGCATAGCCGCGGTGATCATATGGGGCATCGGCAAGGGTGTTTTAGAGACAATTAAACAATGTGCTGCATCATTAATGTTAATGAATAGAAGAAATAAGATGAAACTACCACCAGGCCCTCCAGGATGGCCCATCGTAGGCAACCTAATGCAATTGGGGCCACTTCCCCACAGAGACCTGGCTGCGCTATGCAAAAAATACGGTCCTCTGGTGTATGTTCGCCTGGGGAAGGTGTTCAGTTCGAGGCCCAAGACGATGGCGGCGACTTACCTGGCCTACGGAAGCCGAGACGTGGCGTTCGCACCGCTTGGGACGCAGTGGAAACACATGAGAAGGATATGCATGGAGCATCTGCTGACAACCAGGCGATTGGATTCGTTTGTGCAGCACCGGAGAGAGGAGGCGGACTTCATGGTGCAGTGTGTACTGCGCGAGGCTCAGGCCGGTGACGGGAAGGTCATCAATCTGCGGGATCTGxxxxxxxxxTTCTCCATGAACAACGTGACCAGGATGATTCTGGGTAAGCGTTATTTCGGTGCGGCGGCCTCTGGTCCGGGCGAGGCAGCTCAGTTCATGGATATCACACATGAACTCTTCTCGTTGTTGGGGATTATTTATTTGGGCGATTATTTGCCCTTCTGGAGGTGGATCGATCCGTCTGCCTGCGAGAATCGAATGCGTGACGTGGAGAAGAGAATGGACGCGTTTCATACCAAGATACTGGAAGAACACCGACAACGACAACGACCACTACATTCAGATTTACATTCACATTTTGATTTTGTTGACGTGTTGCTGTCGTTGCCCGGAGGAGACGGGAAGAAGAGGCTGGACGACATTGAGATCAAGGCACTCATTCAGGACATGATCGCAGCTGCAACGGACACGTCATCCGTGACTAATGAGTGGGCAATGGCACAAGTGATAAAGAACCCTCGCATCCAGAGAAAAGTTCAGGCAGAACTGGACAGGGTGGTGGGGCAAGAGAGAATGGTGGAAGAGGGGGATCTGAACCAACTCCATTATCTTCGGTGCGTTGTTAGAGAAACCTTCAGAATGCACCCGGCAGGACCCTTCCTCATACCACACGAATCCGTGAAGCCCACAAAACTGGCAGGCTACGACATTCCAGAGAGATGCAGAATATTCATAAACACGTACGCCCTTGGACGTAACTCCAAATTATGGCCAGAAAGGGTTGATGAATTCTACCCAGAACGCCACATGCCAACCTCCACGGAAGATTGCCGCGTAGAAATTAGCCATGGCCCCGACTTCAAAATCCTTCCCTTCAGTGCCGGCAAGCGCAGGTGCCCCGGTGCTCCCTTGGGTACATGCTTCGTTCTGCTTGCCTTGGCTCGCCTCTTCCATTCCTTCCATTGGTATCCTGTTCCACCCACCACTGTCGATGACATCGATACTACCACTGAAGTGTATGGCATGACCATGCCCAGAGCACAGCCACTCCTTGCCATGGCTGAACCTCGACTGCCTCCTCACTTGTATACACCATAA___ATCTCCATTTTATCTTTACTCCCTTTCCTAAACTGCTTCACAACCCCTTAGTCACTTCACTATTC

Fln Alignment:

Contig24078___KMKLPPGPPGWPIVGNLMQLGPLPHRDLAALCKKYGPLVYVRLG---------------------KVFSSRPKTMAATYLAYGSRDVAFAPLGTQWKHMRRICMEHLLTTRRLDSFVQHRREEADFMVQCVLREAQAGDGKVINLRDLLxAFSMNNVTRMILGKRYFGAAASGPGEAAQFMDITHELFSLLGIIYLGDYLPFWRWIDPSACENRMRDVEKRMDAFHTKILEEHRQ----RQRPLHSDLHSHFDFVDVLLSLPGGDGKKRLDDIEIKALIQDMIAAATDTSSVTNEWAMAQVIKNPRIQRKVQAELDRVVGQERMVEEGDLNQLHYLRCVVRETFRMHPAGPFLIPHESVKPTKLAGYDIPERCRIFINTYALGRNSKLWPERVDEFYPERHMPTSTEDCRVEISHGPDFKILPFSAGKRRCPGAPLGTCFVLLALARLFHSFHWYXXXXXXXXXXXXXXXVYGMTMPRAQPLLAMAEPRLPPHLY
F1BLA9_______________RRRLPPGPPRWPIFGNLLQLSPLPHKDFARFCTKYGPLVYLRLGTIDAITTDDPEVIREILIRQDEVFASRPRTLAAVHLAYGCGDVALAPLGPNWKRMRRVCMEHLLTTKRLESFAAHRALEAEHLCQFVLAKAQS--GKPVNLREVLxAFSMNNVTRMLLGKQYFGLQSAGPGEAMEFMHITHELFWLLGLIYLGDYLPAWRWLDPYGCEKKMRDVEKKVDDFHQKIIDEHRKAREAKKASLDDDNKEDMDFVDVLLSLPGENGKEHMDDVEIKALMQDMIAAATDTSSVTNEWVMAEVIKNPRVLRKIQEELDAVVGRDRMVAESDLGQLTYLRCVVRESFRMHPAGPFLIPHESLKPTTIMGYDIPAQTRIFINTHALGRNTRIWDD-VDAFRPERHLP-ATADGRVEISHLPDFKILPFSAGKRKCPGAPLGVILVLMALARLFHCFDW-SPPDGLRPEDIDTQEVYGMTMPKAKQLVAVAKPRLPPQMY

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1227		20	80		0.995493
1229	80			20	0.995493
1230		20	80		0.995493
1231	80		20		0.995493
1233	25		75		0.996473
1761	80	20			0.995493
1762	80	20			0.995493
1763		20		80	0.995493
1764		20	80		0.995493
1765	20			80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1677	1693	AATGT AATGT AATGT AA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain