SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24072

Length: 1048 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24072

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription cofactor, putative n=1 Tax=Ricinus communis RepID=B9RHR9_RICCO	-	-	3.0e-14	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	histone acetyltransferase	-	-	3.81477e-29	59%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	3.81477e-29	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	3.81477e-29	59%
Blast2go	photoperiodism, flowering	GO:0048573	Biological Process	3.81477e-29	59%
Blast2go	flower development	GO:0009908	Biological Process	3.81477e-29	59%
Blast2go	histone acetylation	GO:0016573	Biological Process	3.81477e-29	59%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	3.81477e-29	59%

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
377			33	66	0.997452
451	66			33	0.997452
460		75		25	0.996473
468			25	75	0.996473
470	75			25	0.996473
471		75		25	0.996473
472	75		25		0.996473
473	75			25	0.996473
475	25	75			0.996473
479	25			75	0.996473
483	75		25		0.996473
542	66	33			0.997452
669	66	33			0.997452
670			33	66	0.997452
671	33		66		0.997452
706	33	66			0.997452
710		33	66		0.997452
711			66	33	0.997452
716	33			66	0.997452
718			66	33	0.997452
720	33			66	0.997452
722		33		66	0.997452
735		60	40		1.0
736		80		20	0.995493
737		80		20	0.995493
739	80			20	0.995493
740	80			20	0.995493
741		80		20	0.995493
743			80	20	0.995493
745	20	80			0.995493
751			20	80	0.995493
753	20		80		0.995493
754	20			80	0.995493
756	20	80			0.995493
759		20	80		0.995493
760		60		40	1.0
765	20	80			0.995493
768	20	80			0.995493
769	20	80			0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain