SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene24017

Length: 641 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene24017

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative histone deacetylase complex, SIN3 component (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T7L8_PHYPA	-	-	1.0e-34	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	histone deacetylase sin3 component	-	-	4.90987e-39	70%

Source	InterPros	Term	Type	Identity
Sma3	Paired amphipathic helix	IPR003822	-	-
Sma3	Histone deacetylase interacting	IPR013194	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
13		40	60		1.0
15		60		40	1.0
16		40		60	1.0
19		60	40		1.0
25			60	40	1.0
29			40	60	1.0
33	20			80	0.995493
35	40			60	1.0
39	40	60			1.0
41		60		40	1.0
85		80		20	0.995493
100	40		60		1.0
101	40	60			1.0
201		60	40		1.0
237	60		40		1.0
243	40	60			1.0
244			60	40	1.0
258	40	60			1.0
263	60		40		1.0
265	40		60		1.0
270		40	60		1.0
278	40		60		1.0
368		33	66		1.0
382		66	33		0.997452
399		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain