SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23988

Length: 889 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23988

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nitrate transporter 1.5 [Arabidopsis thaliana] sp\|Q9LQL2.2\|PTR14_ARATH RecName: Full=Nitrate transporter 1.5 gb\|AEE31488.1\| nitrate transporter 1.5 [Arabidopsis thaliana]	-	-	9.99995e-41	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	nitrate transporter -like	-	-	4.2039e-45	84%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Full-Lengther Next Prediction

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
259		14		85	0.993533
263	85		14		0.993533
303		11	88		0.923564
305	77	11		11	0.968132
306	77	11		11	0.968132
310	11	88			0.923564
311	11	88			0.923564
314		11	77		0.968132
315	11			88	0.923564
316			88	11	0.923564
317		88	11		0.923564
318	88	11			0.923564
321	77	11	11		0.968132
322	11	88			0.923564
344		10		90	0.90298
348	90			10	0.90298
350	10	90			0.90298
351	90	10			0.90298
352		10	90		0.90298
355			10	90	0.90298
362		10	90		0.90298
365	90	10			0.90298
366	10		90		0.90298
426	81		18		0.999994
469		62		37	1.0
479		62		37	1.0
555		40	60		1.0
559	60	40			1.0
561		42		57	1.0
592	55		44		1.0
595	44			55	1.0
602	44		55		1.0
668		78		21	1.0
688	21		78		1.0
699		77	22		1.0
727	76		23		1.0
739		75	25		1.0
753	25		75		1.0
755	75		25		1.0
757		75	25		1.0
769			30	70	1.0
803	70		30		1.0
812			30	70	1.0
839		62	37		1.0
847			83	16	0.994512
851		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain