SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23961

Length: 979 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23961

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Caffeoyl-CoA O-methyltransferase n=1 Tax=Chamaecyparis obtusa var. formosana RepID=A0S6W3_CHAOB	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	caffeoyl- o-methyltransferase	-	-	66%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	O-methyltransferase, family 3	IPR002935	-	-
Sma3	Domain of unknown function DUF292, eukaryotic	IPR005061	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD15

Fln msg: Unexpected stop codon in the beginning of your sequence,

Fln protein: ISLCLMISRDG*TANNHFSWCDRNFMAIPPDEGQFLSLLLKLMNAKNTIEIGVYTGYSLLSTALALPDDGKVRYIQTPCNQGENSEVLI**VDLPNNKPYTCTGEN*LMKVSATDNSDGS**RHL*DRVTYH*KAGVAHKIDFREGPALPFLDEMIKNVGMHGSFDFAFVDADKANYLNYHERLIDLVKIGGVIAYDNTLWKGSVAAPPEDEMNEGFRKVRVFTLEVNKVLAADPRVEIAQIPVADGITLCRRLS*

Protein Length: 257

Fln nts: CTATCTCTCTGTGTCTTATGATTTCTCGAGATGGGTGAACTGCAAATAATCACTTTTCATGGTGTGACAGGAACTTTATGGCCATTCCTCCCGATGAGGGTCAATTTCTGAGCCTTCTGCTGAAGCTAATGAATGCCAAGAACACCATCGAGATTGGGGTGTACACCGGGTACTCACTTCTGAGCACAGCCCTTGCTTTACCTGATGACGGGAAGGTAAGGTACATTCAGACTCCATGTAATCAAGGAGAGAACTCAGAAGTATTAATTTAATAAGTGGATTTGCCAAACAATAAACCTTATACTTGTACGGGGGAGAATTAATTGATGAAAGTTAGCGCGACAGATAATAGCGATGGATCCTGATAGAGACACTTATGAGATCGGGTTACCTATCATTGAAAAGCTGGAGTTGCCCACAAAATTGACTTCAGAGAGGGCCCTGCTCTGCCATTTTTGGATGAAATGATTAAAAATGTTGGGATGCACGGCTCGTTTGATTTTGCGTTTGTGGACGCCGACAAAGCGAACTATCTGAACTACCATGAGCGGCTGATCGATCTGGTGAAGATCGGGGGTGTGATTGCGTATGACAATACTCTGTGGAAAGGAAGCGTTGCGGCTCCCCCCGAAGATGAGATGAACGAAGGGTTCAGAAAAGTGAGAGTTTTCACATTGGAAGTGAACAAGGTGCTTGCCGCTGATCCCCGCGTCGAGATTGCCCAAATCCCAGTCGCCGATGGAATCACGCTGTGCAGGCGTCTCTCCTGA___AGTTTATTCAGCGATCAGTTCACAGTATGCTGTGGATGTGAGCCCTGACAGTCAGAAATTATATCCATAGAAATTGTTTCTAAATTTTGTGGTATAATTTGTTTGCTAAATTAGTCGGTGTGGTATTTAATGTAATATTTATTAGGATATTTGACAGCAAATAGGCCTTAGTGCCGGAGGAAATAAAGAATTTGAAAACCAGTGCTATT

Fln Alignment:

Contig23961___NFMAIPPDEGQFLSLLLKLMNAKNTIEIGVYTGYSLLSTALALPDDGKVRYIQTPCNQGENSEVLI**VDLPNNKPYTCTGEN*LMKVSATDNSDGS**RHL*DRVTYH*KAGVAHKIDFREGPALPFLDEMIKNVGMHGSFDFAFVDADKANYLNYHERLIDLVKIGGVIAYDNTLWKGSVAAPPEDEMNEGFRKVRVFTLEVNKVLAADPRVEIAQIPVADGITLCRRLS
D5AD15_______________NFMAIPPDEGQFLSLLLKLMNAKNTIEIGVYTGYSLLSTALALPEDGKIIAMDTDRRTYEIGRPIIE-------------------------------------------KAGVAHKIDFREGPALPFLDEMLKNGGMQGSFDFAFVDADKGNYLNYHKRLIDLVKIGGVIAYDNTLWKGTVASPPEVHMNEGFRNVRLFTLEVNKALAADPRIEIAQIPVADGITLCRRLS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
443		33		66	0.997452
492	66	33			0.997452
495	25		75		0.996473
497			25	75	0.996473
498			16	83	0.994512
655	87		12		0.992554
790		18		81	0.999994
793	81			18	0.999994
795	81		18		0.999994
816		80	20		0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain