SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23926

Length: 1421 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene23926 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin synthase n=1 Tax=Ginkgo biloba RepID=B2M0X8_GINBI	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	anthocyanidin synthase	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P059

Fln msg:

Fln protein: MAPARVESLALSGLAEIPPEYVRPVEERPTECVLNLKGVEAEGPQIPVVDVAGWDSADEDIKKEIRRQVAEASREWGVMQLLNHGISETLIERLQAAGKAFFDLPVEEKEKYANDHAAGKIAGYGSKLANNASGQLEWEDYYFHLLWPEHRRDMTTWPKHPQEYIEVTDAYGREIRKLVTKILATLSLDLGVEESRMERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFKDGKWVTAKCIPGALLIHIGDQVEILSNGNFKSGLHRGLVNKEKVRISWAVFCDPPKDALIGPMKEVVDENNPPLFPAKTFQQHTDHKLFKKAQAQAEAQAAKKLQQCT*

Protein Length: 361

Fln nts: ATGGGGACCTCAATCCCATTCATTTCCTAAGATACTTGAATTCTGAATTCTAGTTTCTAATTATC_-_ATGGCACCAGCGAGAGTGGAGAGCCTTGCATTGAGCGGCCTGGCTGAAATTCCTCCCGAGTACGTGAGACCTGTGGAGGAGAGGCCTACCGAATGCGTTCTCAACTTGAAAGGAGTGGAGGCTGAAGGCCCGCAGATTCCAGTGGTAGATGTTGCCGGATGGGATTCTGCGGACGAGGACATCAAGAAGGAGATCAGGCGTCAGGTGGCGGAGGCAAGTAGGGAGTGGGGAGTCATGCAGTTGCTGAACCACGGCATATCTGAGACTCTGATAGAGCGCCTTCAGGCAGCTGGCAAGGCGTTCTTCGACCTCCCTGTTGAGGAGAAAGAGAAGTACGCGAACGACCATGCAGCGGGGAAGATAGCGGGGTACGGCTCCAAGCTTGCCAACAATGCCAGCGGTCAGCTTGAATGGGAGGACTACTATTTCCACCTGTTATGGCCTGAACACCGCAGAGACATGACCACCTGGCCTAAACATCCCCAAGAATACATCGAGGTGACAGACGCCTACGGTCGGGAGATACGGAAGCTTGTCACCAAAATCCTGGCGACGCTTTCGTTGGATCTGGGCGTGGAGGAAAGTCGAATGGAGCGCGTGCTTGGTGGTGAAAATCTGGAAATGCAATTGAAAATAAATTACTATCCCCGCTGTCCACAACCAGAGCTTGCTCTCGGAGTGGAGGCGCACACTGACATCAGCGCACTGACATTCCTTCTGCATAACATGGTGCCCGGCCTTCAGCTCTTCAAAGACGGCAAATGGGTCACCGCCAAATGCATTCCAGGCGCCCTCCTCATCCACATTGGCGACCAAGTCGAGATATTGAGCAACGGGAATTTCAAGAGTGGGCTGCACAGAGGGCTGGTGAACAAGGAGAAAGTAAGGATTTCGTGGGCTGTATTCTGTGATCCGCCAAAAGATGCCCTGATCGGACCCATGAAGGAGGTGGTGGACGAGAACAACCCTCCATTGTTCCCGGCGAAGACCTTCCAACAGCACACCGATCATAAGCTGTTCAAGAAAGCCCAAGCCCAGGCCGAGGCCCAGGCAGCCAAGAAACTCCAACAATGTACCTGA___AGTCCTACTTTAACATTGGGCAGAGCTGCGACGTTAGATGGTGTGGTGTTTTCTGTTGGTGGGCTATTTCAGAGTGACTTTGTTTACAATTAGTTAGACTGTCGTATTTGCTGTTTCTTCTGAAAATGTAGGATGGCCTCTATCGATGCAATGCATGCTTGTTCATATATGGTATCCAATGAATCGTTAAAATTTTCCAGTTCACCTTTTCAAGGGTTTCTGCTTCTACTTTGAAAATTTATATATTGATATATGTTCAAACATATTTCACTACTT

Fln Alignment:

Contig23926___MAPARVESLALSGLAXXXXXXXXXXXXXPTECVLNLKGVEAEGPQIPVVDVAGWDSADEDIKKEIRRQVAEASREWGVMQLLNHGISETLIERLQAAGKAFFDLPVEEKEKYANDHAAGKIAGYGSKLANNASGQLEWEDYYFHLLWPEHRRDMTTWPKHPQEYIEVTDAYGREIRKLVTKILATLSLDLGVEESRMERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFKDGKWVTAKCIPGALLIHIGDQVEILSNGNFKSGLHRGLVNKEKVRISWAVFCDPPKDALIGPMKEVVDENNPPLFPAKTFQQHTDH
A9P059_______________MAPARVESLALSGLAAIPAEYVRPLEERPTECVLKVKRVEDEGPQIPVVDVAGWDSADEEIKKEIRRQVAKASREWGVMQLLNHGISETLIERLQAAGKAFFDLPVEEKEKYANDHAAGKIAGYGSKLANNASGQLEWEDYYFHLLWPEQRRDMTTWPKHPQEYIDVTDAYGREIRKLVTKILGTLSSDLGVEEERMERVLGGENLEMQLKINYYPRCPQPELALGVEAHTDISALTFLLHNMVPGLQLFYEGKWVTAKCIPGALIVHIGDQVEILSNGKFKSGLHRGLVNKEKVRISWAVFCDPPKDALIGPMKEVVDESNPPLFPAKTFKEHTDH

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
412		26	73		1.0
799	80			20	0.995493
802		80		20	0.995493
804	20			80	0.995493
806		20	80		0.995493
810	20		80		0.995493
812	83		16		0.994512
814		16		83	0.994512
815	16			83	0.994512
816		16		83	0.994512
818	16		83		0.994512
819		16		83	0.994512
865	12		87		0.992554
866		12		87	0.992554
879	16		83		0.994512
880		16		83	0.994512
1143	33	66			0.997452
1144		66	33		0.997452
1147	33	66			0.997452
1152		66	33		0.997452
1153		66	33		0.997452
1155		33	66		0.997452
1159	33	66			0.997452
1161			33	66	0.997452
1225	10	90			0.999898
1234	80		20		1.0
1235			90	10	0.999898
1237		90		10	0.999898
1240	10	90			0.999898
1241	90		10		0.999898
1257		10		89	0.999919
1267		10		89	0.999919
1288	89	10			0.999919
1313			10	89	0.999919
1321	10		89		0.999919
1333	89	10			0.999919
1342		88		11	0.999952
1392	84		15		0.999986
1398	10		90		0.90298
1414		16	83		0.994512
1415	83	16			0.994512
1416		16	83		0.994512
1417	20		20		0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain