SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23902

Length: 1878 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23902

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Adenosylhomocysteinase n=6 Tax=Tracheophyta RepID=A9NUB8_PICSI	-	-	91%
FL-Next	sp=Adenosylhomocysteinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	s-adenosyl-l-homocysteine hydrolase	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosylhomocysteinase.	EC:3.3.1.1	-	0.0	95%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cysteine and methionine metabolism	00270		0.0	95%
Blast2go	Metabolic pathways	01100		0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	posttranscriptional gene silencing	GO:0016441	Biological Process	95%
Blast2go	methylation-dependent chromatin silencing	GO:0006346	Biological Process	95%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	95%
Blast2go	copper ion binding	GO:0005507	Molecular Function	95%
Blast2go	adenosylhomocysteinase activity	GO:0004013	Molecular Function	95%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Sma3	Adenosylhomocysteinase	IPR000043	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3		IPR003612	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	IPR015878	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUB8

Fln msg: Distance to subject end: 51 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 413 - 485

Fln protein: MEY*RLEIELAEVEMPGLMACRVEFGPAQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDTTLLIHEGVKAEEEFAKTGKVPDPSSTTNVEFQIVLELIKESLKVDPLRYHRMKDRIVGVSEETTTGVKRLYQMQNAGSLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGFGDVGKGCAAALKVAGARVIVTEIDPICALQALMEGLPVLTLEDVVSTADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMQGLETFPGVKKITIKPQTDRWVFPDTNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKKSGKYEK

Protein Length: 414

Fln nts: ACATGGGGACAGACGTCTTATTGGACTCATCTAAAAATATCATATAATTCTTGCATCTGTCAATTCCTAAATTTTATGACAATGACTGAGAAGAAGTCATGGAGCTGCATGAGTGGCTGCGGGGTCATCAGTGTTTGCATTTTCACGTTCATGGGAGTTATCTTGCAGCAAGCAGCTTGGGCTGCCATTGATTGCGACACCGTCATTCAAGAGATCACACCTTGTTCAACTTATCTCACCCAGGGAACGCCGCTGCCACTCAAAGACAGTTCTTGCTGCCATGGAGTTCAGAGCGTGTATGGCCACGCCACTACCAGAGACGAAAGACGACAGATCTGCACGTGTATAAAGAACGCAGCCATTACTTACGATCTCAACGGCACAGCTCTCCAGAATCTTCCATCTGCCTGCGGTCTACACCTCTCCTTCACCATAACCAAAGATATTGACTGCTCAACGATTGGTTGATGCACCAAGGCTTTCTATTGTGAAAGACCATCTGGTGTCTTGATCTTCTTAGTACAGTATATCTTCTATATACTATGGTTGGGTAATGGAACCCTACTGTTCCTATGTAATCCCTTCCTGTCAATAAAATAAATTATTAATTTGGTAATACAAGATTTGAGTATTTCATAA_-_ATGGAATACTGAAGGCTGGAGATCGAATTGGCCGAAGTTGAGATGCCCGGACTAATGGCCTGCCGGGTCGAGTTCGGACCTGCCCAGCCCTTCAAGGGCGCCCGGATCACGGGTTCCCTCCACATGACTATCCAAACCGCTGTTCTCATCGAGACTCTCACCGCCCTTGGGGCTGAGGTGAGATGGTGCTCCTGCAACATATTCTCCACTCAGGACCATGCCGCGGCCGCCATCGCTCGCGATAGCGCGGCAGTGTTTGCCTGGAAGGGGGAAACACTGCAGGAGTACTGGTGGTGCACCGAGAGGGCTCTTGACTGGGGCCCTGGTGGTGGCCCTGATCTAATTGTTGACGATGGCGGTGACACTACACTTCTGATACATGAGGGAGTGAAGGCCGAGGAAGAGTTTGCCAAGACTGGGAAGGTGCCAGATCCGTCTTCTACCACCAATGTGGAGTTTCAGATCGTGTTGGAGTTGATCAAGGAAAGCCTCAAGGTGGATCCATTGAGGTATCACAGAATGAAGGATAGAATTGTTGGTGTGTCTGAGGAGACTACTACTGGGGTTAAGAGGCTTTACCAGATGCAGAATGCCGGGTCCCTGCTGTTCCCTGCTATCAATGTTAATGACTCTGTTACAAAGAGCAAGTTTGACAACTTGTATGGTTGTAGGCACTCTCTCCCAGACGGTCTTATGAGAGCCACAGATGTCATGATTGCTGGTAAGGTTGCTGTTGTTTGTGGGTTTGGAGATGTTGGCAAGGGTTGTGCTGCAGCCTTGAAAGTCGCGGGAGCTAGGGTCATTGTTACAGAGATTGATCCTATCTGTGCCCTGCAAGCTCTTATGGAAGGCCTTCCTGTCCTCACGCTTGAGGATGTAGTTAGCACTGCTGATATCTTTGTGACAACCACTGGCAACAAGGACATCATCATGGTAGATCACATGCGGAAAATGAAGAACAATGCCATTGTTTGCAACATCGGTCACTTTGACAACGAGATTGATATGCAAGGCCTTGAAACTTTCCCTGGCGTTAAGAAGATTACCATCAAGCCTCAGACTGACAGGTGGGTGTTCCCTGACACCAACAGTGGCATCATTGTTCTTGCAGAGGGGCGTCTGATGAACTTGGGTTGTGCAACTGGCCACCCAAGTTTTGTCATGTCTTGCTCCTTTACAAACCAGGTCATTGCTCAGTTAGAGCTCTGGAATGAGAAGAAATCAGGGAAGTATGAGAAG

Fln Alignment:

Contig23902___IQDLSIS*MEY*RLEIELAEVEMPGLMACRVEFGPAQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDTTLLIHEGVKAEEEFAKTGKVPDPSSTTNVEFQIVLELIKESLKVDPLRYHRMKDRIVGVSEETTTGVKRLYQMQNAGSLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGFGDVGKGCAAALKVAGARVIVTEIDPICALQALMEGLPVLTLEDVVSTADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMQGLETFPGVKKITIKPQTDRWVFPDTNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKKSGKYEK
A9NUB8_______________VKDMSQA--DFGRLEIELAEVEMPGLMACRVEFGPAQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAASAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDTTLLIHEGVKAEEEFAKTGKVPDPASTTNVEFQIVLALIKESLKVDPLRYHRMKDRIVGVSEETTTGVKRLYQMQNSGSLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAAMKVAGARVIVTEIDPICALQALMEGLPVLTLEDVVSTADIFVTTTGNKDIIMLDHMRKMKNNAIVCNIGHFDNEIDIQGLENFPGVKKITIKPQTDRWVFPDTKSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNERKSGKYEK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
163		80	20		0.995493
164			20	80	0.995493
950		75		25	0.996473
1007	83		16		0.994512
1092			11	88	0.923564
1737			20	80	0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain