SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23898

Length: 1230 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23898

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative purine permease [Oryza sativa Japonica Group]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	probable purine permease 11-like	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	-
Sma3	Drug/metabolite transporter	IPR000620	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Nucleotide-sugar transporter	IPR007271	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Cas1p 10 TM acyl transferase domain	IPR012419	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLF0

Fln msg: Overlapping hits, possible frame ERROR between 729 and 728,

Fln protein: MLHTDNSFLMDDIQMGGIPEHHSRVQEGPSLIRDAEPGRAPSRKIFAGKRKTHWAVVIFSVLSLIVGQDAATLLNRYYFDDGGNSIWISTLVQSVGCPILFIPLVFYQGKQASKITPPTPKLVLIYVGLGLLLAGDNLLYSWGISYMPVSTYSLLCSSQLAFNAVFAFILNRQKITPYILNSLVLLTLGAILLAVHSDGDRPKGVNTAKYIVGFICTVAASAIYGLLLPLMQLVxxFNRVIKKETFAVVLEMQIFTSIVATVVCIVGLFVSGEFRDMKKEAENFTTGKVAYYMTLIWSAIGWQVSSVGGVGLIFLVSSLFSNVISALALPIIPILSVAFFHDRMEALKIISMLLSIWGFVSYIYGGYLDSKPSKLSTSVLTRIAVLDERSSIN*

Protein Length: 395

Fln nts: CGTCGTGACCTTGGCTGTCACTCA_-_ATGTTGCACACAGATAATTCATTCCTAATGGATGATATTCAGATGGGTGGTATCCCAGAACACCACAGCAGAGTACAAGAAGGCCCTAGTTTGATCAGGGATGCAGAGCCAGGAAGAGCCCCCAGTAGAAAGATATTTGCAGGAAAAAGGAAGACCCATTGGGCGGTTGTAATATTCAGCGTTTTGTCACTTATTGTAGGTCAAGACGCTGCTACACTTCTTAACAGGTATTACTTTGATGATGGTGGTAACAGTATATGGATATCAACTCTGGTACAGTCGGTAGGATGTCCTATTCTTTTCATACCTCTGGTATTTTATCAAGGAAAACAAGCCTCTAAGATTACCCCGCCCACACCCAAATTGGTGCTAATTTATGTCGGTTTGGGCTTGCTTCTAGCTGGAGACAATCTGCTTTACTCATGGGGTATCTCTTATATGCCTGTTTCGACCTATTCGCTTCTCTGTTCAAGTCAACTGGCCTTCAATGCTGTATTTGCATTCATATTGAACAGGCAGAAAATTACTCCATATATCCTGAATTCTCTGGTTTTGCTGACTTTGGGTGCAATTCTGCTTGCGGTTCATTCAGATGGTGACAGGCCTAAGGGAGTGAATACTGCCAAGTACATAGTAGGCTTCATTTGCACTGTTGCAGCTTCTGCAATCTATGGGCTGCTTCTTCCATTGATGCAGCTTGTAxxxxxxTTCAATAGGGTTATAAAGAAGGAGACCTTTGCAGTGGTTCTGGAGATGCAAATTTTCACATCCATTGTTGCTACTGTGGTATGCATAGTTGGATTGTTTGTTAGTGGGGAGTTCAGAGATATGAAAAAAGAGGCTGAGAATTTCACAACCGGGAAAGTTGCCTATTATATGACATTGATATGGTCTGCAATAGGTTGGCAGGTTTCTTCCGTTGGTGGAGTGGGTTTGATATTTTTGGTTTCTTCCTTGTTCTCAAATGTGATTAGCGCTCTGGCCCTCCCTATTATACCCATATTATCAGTGGCTTTCTTCCATGACAGAATGGAAGCTCTCAAAATTATTTCGATGTTGTTAAGTATATGGGGATTTGTTTCCTATATATATGGTGGGTACTTGGATTCAAAGCCTTCTAAGCTTTCTACAAGTGTTTTGACCAGGATAGCTGTTCTAGATGAAAGATCATCAATAAATTGA___TAGCCATTTATATTTAACTCATACTC

Fln Alignment:

Contig23898___MGGIPEHHSRVQEGPSLIRDAEPGRAPSRKIFAGKRKTHWAVVIFSVLSLIVGQDAATLLNRYYFDDGGNSIWISTLVQSVGCPILFIPLVFYQGKQASKITPPTPKXXXXXXXXXXXXXXXXXXYSWGISYMPVSTYSLLCSSQLAFNAVFAFILNRQKITPYILNSXXXXXXXXXXXXXHSDGDRPKGVNTAKYIVGFICTVAASAIYGLLLPLMQLxxNRVIKKETFAVVLEMQIFTSIVATVVCIVGLFVSGEFRDMKKEAENFTTGKVAYYMTLIWSAIGWQVSSVGGVGLIFLVSSLFSNXXXXXXXXXXXXXXXXFFHDRMEALKIISMLLSIWGFVSYIYGGYLDSKPS
B8LLF0_______________MADIQESCSSVQEGPDLITDAEQGGGSNRRILAGKRTTHWVLVIFSILALLVGQAAATLLSRYYFAYGGDSRWISTLLQTVGWPILLIPLVLYQGKEASKLTPLTPKLVLIYVALGLLLAGDNLLYSWGVSFMPASTYSLLCSSQLAFNAVFAFMLIRQKITPYIVNSLVLLTLSAILLGVHSDSDRPEGVNTAKHIVGFICTIAASAIYGLLLPLMQLxxDRVIKKETFAVVLEMQIYTSLVATVVCIVGLFVSGEFRDIKEEAHSFTRGKVAYYMTLIWSAIGWQVCSVGVVGLIFLVSSLFSNVISTLALPVVPILSVGFFHDKMDALKIISMLLSIWGFVSYIFGGYVDSKPA

SNPs (tot: 85)

Position	A %	C %	G %	T %	Probability
219		16		83	0.994512
224	16	83			0.994512
226			16	83	0.994512
240	83	16			0.994512
241		66		33	1.0
242	16		83		0.994512
250	83		16		0.994512
291			50	50	1.0
310	50		50		1.0
313	12		87		0.999964
318		12		87	0.999964
328		12		87	0.999964
350		16		75	0.99999
415		81		18	1.0
435		86		13	0.999973
466		86		13	0.999973
469		13	13	73	0.999956
493			85	14	0.999981
511	83		16		0.999991
542		20		80	1.0
557	84	15			0.999986
563		84		15	0.999986
593	88			11	0.923564
645	14		85		0.999981
667	83	16			0.999991
670	54		45		1.0
673	45	54			1.0
682		60		40	1.0
689			80	20	0.999996
702		20		80	0.999996
705	88			11	0.923564
717			10	90	0.90298
720		90	10		0.90298
726		10		90	0.90298
727		10	90		0.90298
728		90		10	0.90298
729	90			10	0.90298
731		90	10		0.90298
732		10		90	0.90298
734	10		90		0.90298
737		10		90	0.90298
796			13	86	0.999973
807	46			53	1.0
815		53	46		1.0
826	86		13		0.999973
855		81		18	0.999994
862	81		18		0.999994
866	90			10	0.90298
870	50		50		1.0
881	50		50		1.0
885		90		10	0.90298
891	50	50			1.0
906		50		50	1.0
927		30		70	1.0
936	50			50	1.0
947		70	30		1.0
951		70	30		1.0
952	10		90		0.90298
955		10	90		0.90298
959		9	63	27	1.0
960	81	18			0.999994
965	18	18	63		0.999997
972	70	20	10		0.999998
974		10		90	0.90298
975	10			90	0.90298
976		10		90	0.90298
978		10	90		0.90298
979	10		90		0.90298
994	25			75	1.0
1009	41		58		1.0
1027	66		33		1.0
1029	80		19		1.0
1045		20	80		1.0
1053		65		35	1.0
1061	10		89		0.999919
1100		17		82	1.0
1110		35		64	1.0
1147	14	85			0.999981
1167		10		90	0.90298
1168		10	90		0.90298
1170			22	77	0.999999
1171		22		77	0.999999
1183			77	22	0.999999
1193	77	22			0.999999
1200	77	22			0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain