SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23892

Length: 1553 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene23892 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pyrophosphate-energized vacuolar membrane proton pump n=21 Tax=Magnoliophyta RepID=AVP_VIGRR	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	pyrophosphate-energized vacuolar membrane proton pump	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Prephenate dehydrogenase	IPR003099	-	-
Sma3	Pyrophosphate-energised proton pump	IPR004131	-	-
Sma3	NADP oxidoreductase, coenzyme F420-dependent	IPR004455	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQU4

Fln msg: Separated hits, possible frame ERROR between 1309 and 1414, Distance to subject end: 316 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 472 - 765

Fln protein: LILIPVAAVIGIGFALIQWVLVSRVKVSPDHSHTPSNNNKNGYSEYLIEEEEGLNDHNVVNKCAEIQNAISEGANSFLFTEYQYMGIFMVCFAALIFLFLGSVEKFSTKSQPCTYNKEVMCKPALANAIFSTIAFLLGSLTSILSGYLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLFLAVTLFKLYCGVGCDGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGNSHDLTAMCYPLLISSMGIIACLITTLFATDIFEIKAVKEIEPALKKQLIISTVVMTIGIAVVSLVALPSSFTIFNFGTQKVVKNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxELFFCVAIGLWSGLVIGFVTEYYTSNAYSPVQDVADSCRTRKKQQL

Protein Length: 473

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTTCCCTTGGCGCACTCGGTTCATTCTTATTTTATTTTTAGGGGCCTCTCCCCATTCTTCTCCTGGTCTCTAACAATGGGGGGCGCTCTTCTCGTCTGAAACCCTGACTGTGACTGATTTTAATTCCGGTGGCTGCCGTTATTGGTATCGGGTTCGCTCTGATTCAGTGGGTTCTGGTGTCCCGCGTTAAGGTGTCACCCGACCACTCACACACGCCTAGCAATAACAACAAAAATGGCTACAGTGAGTACTTGATCGAAGAAGAGGAAGGGCTGAACGATCACAATGTCGTCAATAAATGCGCTGAGATCCAGAACGCCATCTCTGAAGGAGCGAACTCATTTTTATTCACCGAGTACCAGTACATGGGTATTTTCATGGTCTGCTTTGCTGCCCTTATATTTCTGTTCCTTGGTTCAGTGGAGAAATTCAGTACAAAAAGTCAGCCATGCACGTACAACAAAGAAGTGATGTGCAAGCCAGCCCTTGCTAATGCTATTTTCAGCACAATAGCTTTCTTGCTTGGTTCTTTGACATCTATCCTTTCTGGCTATCTTGGAATGAAAATTGCAACTTACGCAAATGCAAGAACAACACTAGAAGCCAGGAAGGGTGTCGGGAAGGCTTTCATTACTGCCTTTCGATCTGGTGCTGTTATGGGCTTTCTGCTTGCTGCAAATGGACTGTTGGTGCTTTTCCTTGCTGTTACTCTTTTCAAGTTGTACTGTGGAGTTGGCTGTGATGGTCTTTTTGAAGCCATTACCGGTTATGGTCTTGGTGGTTCTTCCATGGCTCTGTTTGGCAGAGTAGGTGGTGGTATTTACACCAAAGCAGCAGATGTAGGTGCTGATCTTGTTGGCAAGGTTGAGAGGAACATTCCTGAAGACGATCCACGCAACCCAGCTGTCATTGCTGATAATGTTGGTGACAATGTTGGAGATATAGCTGGTATGGGATCAGATCTATTTGGGTCCTATGCTGAATCTTCCTGTGCAGCTCTGGTTGTTGCATCCATATCATCATTTGGAAACTCTCATGATCTTACTGCCATGTGTTATCCCTTGCTCATTAGTTCAATGGGTATCATTGCTTGCTTAATCACAACTCTGTTTGCAACTGACATATTTGAGATCAAGGCTGTGAAGGAAATTGAGCCTGCATTGAAAAAGCAGCTTATTATCTCCACAGTAGTGATGACTATTGGCATTGCTGTTGTAAGCCTAGTTGCATTGCCTTCGTCCTTCACTATTTTCAATTTTGGTACCCAGAAGGTTGTAAAGAACTGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGAGCTTTTCTTCTGTGTTGCTATTGGTTTGTGGTCTGGCCTTGTTATTGGTTTTGTCACTGAGTACTATACTAGTAATGCTTACAGCCCTGTCCAAGATGTTGCTGATTCATGCAGGACTAGGAAAAAGCAGCAACTAAT

Fln Alignment:

Contig23892___FALIQWVLVSRVKVSPDHSHTPSNNNKNGYSEYLIEEEEGLNDHNVVNKCAEIQNAISEGANSFLFTEYQYMGIFMVCFAALIFLFLGSVEKFSTKSQPCTYNKEVMCKPALANAIFSTIAFLLGSLTSILSGYLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMXXXXXXXXXXXXXXXVTLFKLYCGVGCDGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGNSHDLTAMCYPLLISSMGIIACLITTLFATDIFEIKAVKEIEPALKKQLIISTVVMTIGIAVVSLVALPSSFTIFNFGTQKVVKNWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxELFFCVAIGLWSGLVIGFVTEYYTSNAYSPVQDVADSCRT
B8LQU4_______________FALIQWFLVSRVKVAPDHSHTPSNNNKNGYTEYLIEEEEGVNDHNVVNKCAEIQNAISEGANSFLFTEYQYMGIFMVCFAILIFLFLGSVEKFSTQSQPCTYNKEVMCKPALANAIFSTISFLLGSLTSIFSGYLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLFVAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGNSHDLTAMCYPLLISSMGIIVCLITTLFATDVFEIKAVKEIEPALKKQLIISTVLMTIGIAVVSFVALPSSFTIFNFGAQKVVKNWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxELFFCVSIGLWAGLVIGFVTEYYTSNAYSPVQDVADSCRT

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
260	33	66			0.997452
471	11		88		0.923564
1417		60	40		1.0
1421		60	40		1.0
1426		40		60	1.0
1429	40		60		1.0
1433		40		60	1.0
1434	40			60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain