SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23826

Length: 1239 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23826

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen allergen CJP38 n=1 Tax=Cryptomeria japonica RepID=Q588B8_CRYJA	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	beta- -glucanase	-	-	68%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTI6

Fln msg:

Fln protein: MAAFKDQSRIFLIGCVAIFCCLILADGDKIGVDYGMDADNLPSADEVVTLMKSNNIGKTRIYQENNVVLQAFANSGIDVIVGVANGELENISSSQESANDWVNEYIVPFYPATNVKYIAVGNEVLITKENVGYVPYLVPAMNNIQTAIQNANLQNSIKVSTTHRPDVSSGYPPSNGVFVDAVKDTMSQILNFLSQNGGPFMADVYPYFSYIGDTKDISLDYALFKSTSTVVQDGDHSYTNLFDAMVDTLLSAMEASGYPNIPIVITESGWPSAGADAATIENAQTYNNNLIKHVLSNAGTPKRPGMSIDTYVFALFNEDLKQGDETEKHFGLFDPTTKQPVYSVNFSP*

Protein Length: 350

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATCCTCTTATTTCCTGTGATAAAA_-_ATGGCAGCCTTTAAAGACCAATCTAGGATCTTCCTGATTGGATGTGTGGCCATCTTCTGTTGTTTAATTCTCGCAGATGGTGATAAAATAGGAGTGGACTATGGCATGGACGCAGACAATCTTCCATCTGCAGACGAGGTGGTAACTTTGATGAAGTCCAACAACATTGGGAAAACGAGAATTTACCAGGAAAACAATGTTGTACTGCAAGCTTTCGCGAATTCTGGTATCGATGTAATAGTGGGTGTCGCTAACGGCGAACTGGAGAACATATCTTCCAGCCAAGAGTCGGCAAACGATTGGGTTAACGAGTACATTGTGCCCTTCTATCCCGCCACCAATGTCAAATACATTGCAGTGGGAAACGAGGTTTTGATAACCAAGGAAAACGTTGGGTACGTACCCTATCTTGTTCCGGCCATGAACAACATTCAAACTGCGATCCAGAACGCTAATCTGCAGAATAGCATCAAGGTCTCTACCACCCACAGGCCGGATGTTAGCAGCGGCTACCCGCCGTCTAACGGAGTCTTCGTAGATGCTGTGAAGGACACGATGAGCCAAATACTCAATTTTCTGTCACAGAACGGCGGTCCCTTCATGGCGGATGTCTATCCATACTTCAGCTACATCGGCGACACAAAAGACATTTCTCTGGATTATGCTCTGTTTAAGTCTACGTCTACGGTGGTGCAAGACGGAGATCACAGCTACACCAACCTGTTCGATGCCATGGTTGATACTCTTTTGTCGGCCATGGAAGCCTCGGGGTATCCTAACATCCCGATCGTCATTACCGAAAGTGGATGGCCTTCTGCTGGCGCGGATGCGGCCACCATTGAGAATGCTCAGACCTATAACAATAATCTTATTAAACATGTATTATCGAATGCAGGAACACCAAAGAGGCCAGGAATGAGCATCGACACATATGTTTTCGCGCTTTTCAACGAGGATTTGAAGCAAGGCGATGAGACAGAGAAACACTTTGGACTATTCGACCCTACTACTAAACAGCCTGTATACTCTGTCAACTTCTCACCATGA___GTTGTGTTGGAATCCACATCACATGTGACCCGAGTCGATGCAGACAAGCCCTTATCTTCATGCACTGCTATATGTAATCTGCAAGTGTATGGTTATTTCTAAAATAATTTGTGAACAATAAAATGTCAAAGAAGTTGAGTTTC

Fln Alignment:

Contig23826___MAAFKDQSRIFLIGCVAIFCCLILADGDKIGVDYGMDADNLPSADEVVTLMKSNNIGKTRIYQENNVVLQAFANSGIDVIVGVANGELENISSSQESANDWVNEYIVPFYPATNVKYIAVGNEVLITKENVGYVPYLVPAMNNIQTAIQNANLQNSIKVSTTHRPDVSSGYPPSNGVFVDAVKDTMSQILNFLSQNGGPFMADVYPYFSYIGDTKDISLDYALFKSTSTVVQDGDHSYTNLFDAMVDTLLSAMEASGYPNIPIVITESGWPSAGADAATIENAQTYNNNLIKHVLSNAGTPKRPGMSIDTYVFALFNEDLKQGDETEKHFGLFDPTTKQPVYSVNFSP
A9NTI6_______________MAASKEQTKIILIGFIAIFCCSIFTDGDKIGVNYGMLGDNLPPADQVVTLINNNNIGKTRIFAANRDALNAFANSGIDVIVGVGNEELEAISSSQDSANGWVNNNIVPFYPATNIKYIAVGNEVLPSTQ---YVSYLFPAMTNIQTAVQNANLQNNIKVSTTHVMGVTNGFPPSQGVFGDDVKDTMNSILKFLSDNGAPYMANVYPYFSYTGSGGSITLDYALFKSTSTVVTDNGRSYTNLFDAMVDTVISAMENLGYPNVPIVITESGWPSAGADAATVENAQSYNNNLIQHILSNAGTPKRSGTSIETYIFALFNENTKTGDEIERHFGLFN-ADQSPAYSVNFSP

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
889	94		5		0.999994
891		5		94	0.999994
893	94			5	0.999994
898		5	94		0.999994
902	94			5	0.999994
905		94	5		0.999994
908	94		5		0.999994
910	94	5			0.999995
913	94	1		3	0.951749
967	38		61		1.0
984		29		70	1.0
990		93		6	0.999998
996			6	93	0.999999
1006	6		93		0.999999
1023		6		93	0.999999
1058	8	91			1.0
1078		7		88	0.998862
1113		92	7		0.999664
1134	13	86			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain