SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23717

Length: 1577 nt

Origin of reads: Inia v1 Biogeco1 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23717

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein 70 n=3 Tax=Embryophyta RepID=C9WCK6_9MARC	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	heat shock protein 70	-	-	97%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Chaperone DnaK	IPR012725	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRY5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 493 - 652

Fln protein: GIS*YCSDQHQFTYIFYLGFNREGSILWCTR*FFPSIIYP*YCFVFNPWLPSE*TQSRIREHQPSSCLLRLQG**MRATQWVLSQCATLWCRVF*GFCHAGRLLIPQLPPFHFQAAATRLRQLGFNAYVSSLTALLFQGSTAASQCSCLPNAISPFLRVTVSSQQQHAFLCLVQRSGT*EKC*TLKINVWGLILLNVRNLRVELNSEFNG*I**LVSGIVIACQWNCKCGIE*RIQWLNLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKRKVESKNSLENYAYNMRNTIKDEKIAAKVDPSDKKKIDDAIEQAIQWLDNNQLAEADEFDDKMKELESICNPIIAKMYQGAGGDVPGGGFGGVPPEGGPSSGGGAGPKIEEVD*

Protein Length: 494

Fln nts: ATGGGATCTCATGATACTGTTCTGATCAGCACCAGTTCACCTATATATTTTATCTAGGGTTTAATAGGGAGGGATCAATCCTCTGGTGCACTAGGTAATTCTTTCCCAGTATCATATATCCTTAATACTGTTTTGTTTTTAATCCATGGCTCCCATCAGAATAAACTCAAAGCAGAATAAGGGAGCATCAGCCATCCTCTTGCTTATTGCGATTGCAGGGTTAGTAAATGCGTGCGACGCAGTGGGTATTGAGCCAATGTGCGACACTGTGGTGTCGAGTCTTCTGAGGCTTCTGCCATGCAGGACGGCTGTTGATCCCTCAATTGCCGCCATTCCACTTCCAAGCTGCTGCAACGCGGTTGAGGCAGCTGGGCTTCAATGCCTATGTCTCGTCGTTAACGGCCCTCCTTTTCCAGGGGTCGACCGCGGCCTCGCAATGCAGCTGCCTGCCAAATGCCATCTCACCCTTCCTCCGTGTAACAGTTAGTTCCCAACAACAGCATGCGTTTCTGTGTCTAGTACAGCGGAGCGGCACCTGAGAAAAATGCTAGACGTTAAAAATAAATGTTTGGGGGTTAATTCTACTGAATGTTAGAAACCTACGTGTGGAATTGAATAGTGAATTCAATGGTTGAATCTGATAGCTTGTCAGTGGAATTGTAATAGCTTGTCAGTGGAATTGTAAGTGTGGAATTGAATAGAGAATTCAGTGGTTGAATCTTGACGTAACTCCTCTCTCCCTTGGTCTGGAGACAGCAGGCGGTGTTATGACTGTTTTGATTCCTAGAAATACTACCATTCCTACAAAGAAAGAGCAGGTCTTCTCTACATACTCGGACAACCAGCCCGGTGTCCTCATTCAAGTGTATGAAGGTGAGAGAACACGAACAAGAGATAACAATTTGTTGGGCAAGTTTGAATTGTCTGGTATCCCACCTGCTCCCAGAGGTGTTCCTCAAATCACAGTGTGCTTTGACATTGATGCCAATGGTATCTTGAATGTTTCGGCTGAGGACAAGACCACTGGACAGAAGAACAAGATTACAATCACTAATGACAAGGGTAGGTTGAGCAAGGAAGAGATTGAGAAGATGGTTCAGGAAGCTGAGAAGTACAAGTCTGAGGACGAAGAGCACAAGAGGAAGGTTGAGTCCAAAAACTCGTTAGAGAACTATGCTTATAACATGAGGAACACGATCAAGGATGAGAAAATTGCTGCCAAGGTGGATCCATCCGACAAGAAGAAGATTGACGATGCAATCGAGCAGGCAATCCAATGGTTGGATAACAACCAGCTGGCGGAGGCTGATGAATTTGATGATAAAATGAAGGAACTTGAGAGCATCTGCAACCCGATAATTGCAAAGATGTATCAAGGTGCAGGTGGTGACGTGCCTGGAGGTGGCTTTGGTGGCGTTCCTCCTGAGGGTGGACCGTCCAGCGGTGGAGGTGCTGGCCCTAAGATTGAGGAAGTGGACTAA___TCTGGCTCTTTCTCAAATGCATATGATATTACTGTATTTTCTGTCGTAAGAATTATATTATTATTAGCATAATTTTGATGTTGAAATTTATATTTA

Fln Alignment:

Contig23717___LNLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKRKVESKNSLENYAYNMRNTIKDEKIAAKVDPSDKKKIDDAIEQAIQWLDNNQLAEADEFDDKMKELESICNPIIAKMYQ
B8LRY5_______________LLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQDAEKYKAEDEELKLKVEAKNSLENYAYNMRNTIRDDKIAGKLDPADKKKIEDAVDGIISWLDGNQLAEKEEFEDKLKELESTCNPIIAKMYQ

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
64	33		66		1.0
66	25		50	25	1.0
67			50	50	1.0
69		25	75		0.996473
70			25	50	0.995533
72		50	50		1.0
106		75		25	0.996473
135			66	33	0.997452
239			13	86	1.0
286	88		11		1.0
323	11		88		1.0
596			88	11	0.923564
597	55	44			1.0
624	76			23	1.0
704		3	96		0.986325

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain