SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23686

Length: 932 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23686

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-40 repeat protein-like n=7 Tax=Poaceae RepID=Q7EYE2_ORYSJ	-	-	5.0e-31	64%
FL-Next	sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	49%
Blast2go	protein	-	-	8.71081e-31	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	8.71081e-31	77%
Blast2go	Hsp90 protein binding	GO:0051879	Molecular Function	8.71081e-31	77%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
194		80		20	0.995493
196	60			40	1.0
199		20	20	60	0.99255
201		20	20	60	0.99255
202	40			60	1.0
203	20	80			0.995493
204	60	20		20	0.99255
206			80	20	0.995493
209	80		20		0.995493
211			80	20	0.995493
220		20	80		0.995493
221	20			80	0.995493
235	50			50	1.0
282		61		38	1.0
285		61		38	1.0
293		61	38		1.0
315		38		61	1.0
326	64		35		1.0
327		64		35	1.0
328		64	35		1.0
342		69		30	1.0
393	76	23			1.0
421			23	76	1.0
422	23	76			1.0
431	18		81		0.999994
463	87		12		0.992554
467		12	87		0.992554
480	14		85		0.993533
562	66	33			0.997452
567	66		33		0.997452
568	33		66		0.997452
570	66	33			0.997452
571	66			33	0.997452
577	66			33	0.997452
579	25		75		0.996473
584	25		75		0.996473
587		25		75	0.996473
589		75		25	0.996473
590	75		25		0.996473
592	75	25			0.996473
599		25	75		0.996473
601		25	75		0.996473
602	75			25	0.996473
804		50		50	1.0
835	40		60		1.0
880	75		25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain