SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23617

Length: 1467 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23617

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase n=2 Tax=Picea RepID=Q5W5I2_PICAB	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	peroxidase	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peroxidase, active site	IPR019794	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9C9

Fln msg:

Fln protein: MAKFITALASVVLCVFMIYGGAVNALPSPVAGLSWTFYSSSCPSLESIVWQRMGSYLSADITQAAGLLRLHFHDCFVQGCDGSVLLNATSGEQTAPPNLSLRAQAFKIINDIKQNVEAACSGIVSCADILTLAARDSVVMAGGPFYPLPLGRRDSLTFANRSTVLANLPSPTSNVTGLISVLGPKGLNFTDLVALSGGHTIGRSNCSSFDNRLYNSTTGTQMRDPTMDQSFAKNLYLTCPTSTTVNTTKLDIRTPNLFDNKYYVDLLNRQTLFTSDQTLYTDTRTRDTVINFAVNQTLFFEQFVLSMLKMGQLDVLTGSEGEIRKNCWASNPSTFSIMDPEASQESTSYSM*

Protein Length: 353

Fln nts: AAACATTTTAGGAGTCAGATTGTTTTATTATCGCAGATGAACTGGCTGTCACTCGGATTTGGATATTTTTGCATTTGATAACTCGCAATGTTCATATAAATCGACAGGATCGAAGATTCTATTCCACATCAAAGCAAAGCCAAATCTGTGGCCGAC_-_ATGGCCAAGTTTATCACGGCTCTCGCTTCTGTTGTTCTCTGCGTGTTTATGATCTATGGTGGCGCTGTGAACGCTCTGCCAAGTCCCGTGGCGGGTCTTTCTTGGACGTTCTACAGCTCGAGTTGCCCGTCCTTGGAGTCGATAGTGTGGCAGCGCATGGGATCCTATTTGAGTGCAGACATCACACAGGCTGCAGGTTTGTTAAGGCTTCACTTCCACGACTGCTTTGTCCAGGGATGCGATGGTTCGGTGTTGTTGAACGCAACGTCAGGTGAGCAGACGGCTCCCCCAAACCTATCACTCAGAGCGCAGGCTTTTAAGATTATCAACGACATCAAACAGAACGTCGAAGCCGCCTGCAGCGGAATTGTGTCGTGTGCCGACATTCTTACCTTAGCGGCTCGTGACTCCGTTGTAATGGCTGGAGGACCGTTCTACCCCTTACCACTCGGCCGCAGGGACAGCCTTACCTTCGCCAATCGATCGACCGTTCTTGCCAATTTGCCATCCCCAACCTCCAATGTAACAGGGCTTATCAGTGTTTTGGGTCCCAAAGGCTTGAATTTCACAGATCTGGTGGCCCTCTCAGGAGGACATACAATTGGCAGAAGCAACTGCTCCTCCTTCGACAACAGACTATATAACAGCACCACCGGTACACAAATGCGGGATCCCACGATGGACCAGAGTTTCGCTAAGAATCTTTATCTCACCTGCCCTACCAGTACCACCGTTAACACCACCAAATTGGATATTCGCACTCCCAATTTGTTCGACAACAAATACTACGTCGATCTCCTCAACCGACAGACCCTCTTCACTTCTGACCAGACTCTTTACACCGACACTCGAACCCGCGACACTGTCATCAACTTTGCGGTGAATCAGACCCTCTTCTTTGAACAGTTTGTGCTCAGCATGCTCAAAATGGGGCAGCTGGATGTACTCACAGGAAGCGAGGGAGAGATCCGTAAGAACTGCTGGGCTTCGAATCCTTCAACATTTTCGATTATGGATCCAGAGGCGTCTCAAGAATCGACATCTTACTCCATGTGA___GATTAGGCTTATCAGCGAATCTCAAATATAAGCAAGCAGCGTTAATTCCCAGCAAAGTCCAATAAATATATATATATAACCGGCATCTTGTAAACCCTTTGCGATGCTTGTTCTACAAATTACTTTTaACCTTCTGAAAGAGCAGAAATAGAGCATGAATACAGTGCACTCTCCTTGAAAATAAACAGCGTTTCTGGTTGATAATCAGATTTCCAACCGATTCGGGCAATTTCCAATAAGAAACTTTATTGAATT

Fln Alignment:

Contig23617___MAKFITALASVVLCVFMIYGGAVNALPSPVAGLSWTFYSSSCPSLESIVWQRMGSYLSADITQAAGLLRLHFHDCFVQGCDGSVLLNATSGEQTAPPNLSLRAQAFKIINDIKQNVEAACSGIVSCADILTLAARDSVVMAGGPFYPLPLGRRDSLTFANRSTVLANLPSPTSNVTGLISVLGPKGLNFTDLVALSGGHTIGRSNCSSFDNRLYNSTTGTQMRDPTMDQSFAKNLYLTCPTSTTVNTTKLDIRTPNLFDNKYYVDLLNRQTLFTSDQTLYTDTRTRDTVINFAVNQTLFFEQFVLSMLKMGQLDVLTGSEGEIRKNCWASNPSTFSIMDPEASQESTSYSM
D5A9C9_______________MAKHITPLASVILCMFVIYGGAVHSLPTPVAGLSWTFYSTSCPSLESIVRQRMGAYLSADITQAAGLLRLHFHDCFVQGCDGSVLLNSTSGEQTTPPNLSLRAQAFKIINDIKENVEAACSGIVSCADILALTARDSVVMAGGPFYPIPFGRRDSLTFANLSTTLANLPSPASNVTVLISVLGPKGLTFTDLVALSGGHTIGRSNCSSFQNRLYNTTTGISMQDSTLDQSFAKNLYLTCPTNTTVNTTNLDIRTPNVFDNKYYVDLLKEQTLFTSDQSLYTDTRTRDIVKSFALNQSLFFQQFVLSMLKMGQLDVLTGSEGEIRNNCWAANPSTYSIIDPEASQESSSYSM

SNPs (tot: 92)

Position	A %	C %	G %	T %	Probability
74		75		25	0.996473
75	75		25		0.996473
76	25			75	0.996473
77			25	75	0.996473
78	25			75	0.996473
80	75		25		0.996473
84		75	25		0.996473
88	25	75			0.996473
93		25		75	0.996473
95		75		25	0.996473
97	25			75	0.996473
100	75			25	0.996473
101	75		25		0.996473
102	25	75			0.996473
103			75	25	0.996473
105	75		25		0.996473
106	25		75		0.996473
127	50	50			1.0
260		10		90	1.0
299			94	5	0.998397
476		10		90	0.90298
477	90		10		0.90298
478	90	10			0.90298
489		16	83		0.999991
519	83		16		0.999991
520			83	16	0.999991
525	83	16			0.999991
526		16		83	0.999991
531			16	83	0.999991
537		16	83		0.999991
556		10		90	0.90298
613			88	11	0.923564
614		88		11	0.923564
615	88		11		0.923564
617			88	11	0.923564
619	88			11	0.923564
622		11	88		0.923564
623		88		11	0.923564
625	11			88	0.923564
716	85	14			0.993533
738			88	11	0.923564
739		88	11		0.923564
741		88	11		0.923564
742	11			88	0.923564
782		88	11		0.923564
917		85		14	0.993533
918	85	14			0.993533
919		85	14		0.993533
921		85	14		0.993533
922	14	85			0.993533
924	85	14			0.993533
928			14	85	0.993533
933	14		85		0.993533
951	28		71		1.0
963	28	71			1.0
965	71		28		1.0
967	85			14	0.993533
968			85	14	0.993533
969	85	14			0.993533
970		85	14		0.993533
1006		75		25	0.996473
1010	80	20			0.995493
1021		50		50	1.0
1025		50	50		1.0
1048		50	50		1.0
1058		25		75	0.996473
1060	75	25			0.996473
1082	23	73	3		1.0
1091			65	34	1.0
1103	21		47	31	1.0
1106		78	21		1.0
1109	74		25		1.0
1116	25		74		1.0
1145			26	73	1.0
1146			23	76	1.0
1148			73	26	1.0
1162	26			73	1.0
1163		27		72	1.0
1166		27	72		1.0
1184		23	76		1.0
1190	82		17		1.0
1192	41	58			1.0
1196	17		82		1.0
1199	75	24			1.0
1205		41		58	1.0
1208		82		17	1.0
1217		23		76	1.0
1222		76	23		1.0
1225	40	60			1.0
1255		12	87		0.999964
1274		73		26	1.0
1283	16			83	0.999991

SSRs (tot: 1)

Start position	End position	Sequence	Length
1278	1290	AT AT AT AT AT AT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain