SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23608

Length: 1480 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23608

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	xyloglucan endotransglucosylase/hydrolase protein 22 [Arabidopsis thaliana] sp\|Q38857.1\|XTH22_ARATH RecName: Full=Xyloglucan endotransglucosylase/hydrolase protein 22; Short=At-XTH22; Short=XTH-22; AltName: Full=Touch protein 4; Flags: Precursor gb\|AAK562	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 22	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	71%
Blast2go	response to mechanical stimulus	GO:0009612	Biological Process	71%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	71%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	71%
Blast2go	response to heat	GO:0009408	Biological Process	71%
Blast2go	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	71%
Blast2go	cell wall	GO:0005618	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AED5

Fln msg: Separated hits, possible frame ERROR between 503 and 625, and possible frame ERROR between 822 and 923, your sequence is longer than subject: 390 - 274

Fln protein: MDTPLHLLFLLLASSAARASANFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGTI*SSAFLLLPTSFFFSVN*LQLR*DKLILIFPLMTGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRFSVDGSPVRVFKNRETELGKVDSNYHYPKTQAMRVYSSLWNADDWATRGGLVKTDWTKAPFVATFRNFNAAATSSFDAAAEEVALESNQEQRQRLQWVRKNYMIYDYCADTKRFPQGPPPECK*

Protein Length: 391

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACATCGACGCTCAAAATATGTCTTTATCTTGTCTGCACTCATTTATTCTCATTTCTTGAACTGCACCTCTGCATCGCAAACTCTTTTCCCAATCCTTAATCGGC_-_ATGGACACACCTCTTCACCTCCTCTTTCTTTTATTAGCCTCCTCGGCAGCTCGTGCTTCTGCAAATTTCTACAATGATGTCGACATTACATGGGGCAATGATCGTGCTAAAATCATTGACAATGGACAACAGTTGCAGCTTACTCTTGACCGCTCTTCAGGTACTATTTGAAGTTCTGCTTTTCTTCTGCTACCAACGTCCTTTTTCTTTTCTGTCAATTAACTTCAACTAAGATAAGATAAGCTAATCTTAATATTCCCCTTGATGACAGGTTGTGGTATTCAATCCAAGCAAGAGTATCTATTTGCCAAGATTGATATCCAAATCAAGTTGGTACCTGGCAACTCTGCAGGCACAGTCACTACTTTTTATGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTATCATCTCAAGGTCCCAAACACGACGAAATAGACTTCGAATTTCTGGGCAACCTGTCCGGAGATCCTTATATTTTGCACACTAATGTCTTTGCTCAAGGCCTTGGTGGGCGTGAACAACAATTCTACTTGTGGTTCGACCCAACCCTGGATTTCCACACTTACTCCGTGCTCTGGACATCAAACCAAATCATGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGATTTTCTGTAGACGGGAGTCCTGTTCGGGTGTTTAAGAACAGGGAGACAGAGTTGGGCAAAGTGGATAGCAATTATCATTATCCCAAAACCCAAGCAATGAGGGTCTACTCCAGCCTTTGGAACGCAGATGATTGGGCAACCAGGGGTGGGCTTGTGAAGACCGACTGGACTAAAGCTCCCTTTGTTGCAACCTTCCGCAATTTCAATGCTGCCGCTACTTCTTCTTTTGACGCCGCCGCAGAGGAGGTGGCTTTGGAATCGAACCAAGAACAGAGGCAGAGGCTCCAGTGGGTACGAAAGAACTACATGATCTACGATTATTGTGCAGACACCAAGAGATTCCCCCAGGGACCGCCTCCCGAATGCAAATAA___AACCTCAATCCTTTGAATTCAGAGAATGAACTCTGAATACTTTCCTTCCAAGTATTCTCATTCATTTCTATTACATTAATTCTTTCATTCTTTCTCAGACACACATGTAAAATATTAGAGGGTATCAATCATTTCATTTTTGGTACTGGTATACAATACCAAAGCGGGATTCTTTTGATGATTCAT

Fln Alignment:

Contig23608___NFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGTI*SSAFLLLPTSFFFSVN*LQLR*DKLILIFPLMTGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIMYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFSVDGSPVRVFKNRETELGKVDSNYHYPKTQAMRVYSSLWNADDWATRGGLVKTDWTKAPFVATFRXXXXXXXXXXXXXXEEVALESNQEQRQRLQWVRKNYMIYDYCADTKRFPQGPPPECK
D5AED5_______________NFYSDFDITWGDDRAKILDNGQQLQLTLDRTSG-------------------------------------CGIQSKQEYLFAKIDMQIKLIPGNSAGTVTTYYLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSSQGPKHDEIDFEFLGNLSGDPYIMHTNVFAQGLGNREQQFYLWFDPTLDFHTYSVLWTSNQIIFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFSVDGTPVRVFKNRETELGNVDTNYHYPKNQAMRIYSTLWNADDWATRGGLVKTDWTKAPFVASFRNFNAATSSSSDSAAEE-ALDSNQE--QRLQWVRKNYMIYNYCADTKRFPQGLPPECK

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
129			66	33	0.997452
131	66		33		0.997452
139	66			33	0.997452
140		66		33	0.997452
141		66	33		0.997452
142			33	66	0.997452
525	80	20			0.995493
526			20	80	0.995493
527		20		80	0.995493
539	80		20		0.995493
562	60		40		1.0
576	20		80		0.995493
583			40	60	1.0
612	20		80		0.995493
614		20		80	0.995493
670		75		25	0.996473
691		66		33	0.997452
877		66		33	1.0
901		66	33		1.0
902	33	66			1.0
944	40		60		1.0
956	40		60		1.0
986		60		40	1.0
1052		75		25	0.996473
1119	75			25	0.996473
1124		75		25	0.996473
1140			85	14	0.993533
1164	20		80		0.995493
1166		80	20		0.995493
1170	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain