SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23552

Length: 551 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene23552
CGTCGTGACCTTGGCTGTCACTCAATCTGGATTTGTTACATAGACGGATCTTCGTGGCACAGCTAGGTTGTTGTTGTCGTTTCCAGAAGAAATTTGATAACGTAACGCCACTATCAACACATCCCCAATAAAACAAAAGACGTCGTGACCTTGGCTGTCACTCAATCTAAACATTTATCGTCTGTATCCCAATCATTTATATCTAACCATACTTCAGCTGGGTGAACTGATAGATTTGCAGCACCTCGAAGGTGTTCTACCTAGGTCTTAGTCTTATTTCTGTGTACGGAATCTGCAGAGACTTTGGTCTAATCCATTGGAAAGTTTAAGCTTGGAACCATGGGAGCAGACTTTGTAAGAAATGAGTATCAGTTTTTGAAGGGGCTTGGCTTACATTCCCATAACCTGGGATGTTACGGCAATGGAATATGGAAAGGAAGTGGCAATACTGTGACATCAGTAAATCCTTCTAATAACCAGCCAATAGCAACGGTAGTTGAAGCTTCTATTGAAGAGTACGAAGATAGCTTGAGAGCCTGTGCTGAAGCTCG

Ace file of the UniGene sp_v2.0_unigene23552

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aldehyde dehydrogenase Aldh7B6 n=2 Tax=Bryopsida RepID=Q8RYB7_TORRU	-	-	1.0e-20	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	aldehyde dehydrogenase family 7 member a1	-	-	6.5284e-40	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	6.5284e-40	76%
Blast2go	response to desiccation	GO:0009269	Biological Process	6.5284e-40	76%
Blast2go	response to salt stress	GO:0009651	Biological Process	6.5284e-40	76%

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS13

Fln msg: Distance to subject end: 440 aas, your sequence is shorter than subject: 70 - 511

Fln protein: MGADFVRNEYQFLKGLGLHSHNLGCYGNGIWKGSGNTVTSVNPSNNQPIATVVEASIEEYEDSLRACAEA

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTGGATTTGTTACATAGACGGATCTTCGTGGCACAGCTAGGTTGTTGTTGTCGTTTCCAGAAGAAATTTGATAACGTAACGCCACTATCAACACATCCCCAATAAAACAAAAGACGTCGTGACCTTGGCTGTCACTCAATCTAAACATTTATCGTCTGTATCCCAATCATTTATATCTAACCATACTTCAGCTGGGTGAACTGATAGATTTGCAGCACCTCGAAGGTGTTCTACCTAGGTCTTAGTCTTATTTCTGTGTACGGAATCTGCAGAGACTTTGGTCTAATCCATTGGAAAGTTTAAGCTTGGAACC_-_ATGGGAGCAGACTTTGTAAGAAATGAGTATCAGTTTTTGAAGGGGCTTGGCTTACATTCCCATAACCTGGGATGTTACGGCAATGGAATATGGAAAGGAAGTGGCAATACTGTGACATCAGTAAATCCTTCTAATAACCAGCCAATAGCAACGGTAGTTGAAGCTTCTATTGAAGAGTACGAAGATAGCTTGAGAGCCTGTGCTGAAGCTCG

Fln Alignment:

Contig23552___MGADFVRNEYQFLKGLGLHSHNLGCYGNGIWKGSGNTVTSVNPSNNQPIATVVEASIEEYEDSLRACAEA
B8LS13_______________MGADFVRNEYQFLKGLGLHSHNLGCYGNGIWKGSGNTVTSVNPSNNQPIATVVEASIEEYEDSLRACAEA

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
141	13	86			0.999973
142	13		86		0.999973
147		13	86		0.999973
151		13		86	0.999973
154	13		86		0.999973
156	9	13		72	1.0
157	4	4	81	9	0.999363
160	79	4		4	1.0
161		83	12	4	1.0
163		83	16		1.0
164	83	12		4	1.0
165	83	12		4	1.0
168	41		16		1.0
169			12	87	1.0
172	87			12	1.0
173	87	12			1.0
176	87			4	0.999414
178	4	8		87	0.999414
179	8			91	0.999766

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain