SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23544

Length: 869 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23544

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EF hand family protein n=1 Tax=Zea mays RepID=B6U4W9_MAIZE	-	-	2.0e-23	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	calcium binding protein	-	-	0.0	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	0.0	64%
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
211			60	40	1.0
220			60	40	1.0
221			40	60	1.0
224	60			40	1.0
227		40	60		1.0
231		40		60	1.0
408		33		66	0.997452
537			90	10	0.90298
563	83	16			0.999991
565	83			16	0.999991
566	83	16			0.999991
567		83	16		0.999991
568	83			16	0.999991
571		16	83		0.999991
572	81	18			0.999994
574			81	18	0.999994
581	81	18			0.999994
582	18	81			0.999994
583	81	18			0.999994
586	18			81	0.999994
684		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain