SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23542

Length: 3265 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene23542
ATGGGGGTATAGTCTTAATTCAAAGACTTGAAACAAAGTTTCTAGAATGGAATACCCTTGAGTCAAATAAAATTATGATTTTGTATTTAGTGGCTCCGCTGTGAATCATCGAGCTGGACTGCAAAGCGGGAGCTTCGATGCACGTTGAGAAATGCGTTTGGAAAAAGTTGTGCGCGTACGAATAAGTTTTGTTCGCAATAATCGTTACTTAATTTGCAAATAAATGCTGTCTCGTTCTGAGGCTGTGACCAACGGCACTGTGAACTGGGAATTTGAGGCGCTGAAGAAGCTTTTCACTGGCAGCTGGATCTATGAGGGTGAATGGGCATTTGAAAATGGCCTTTGGAGATGTATCGATGGCTGAGATAAGCGGACGGCTCCCTGGCTTCCGGCAGTCTGGTCTGATTGACTGTTGAGGTATTGTACTAGTTGGGGAAAATTTAATGGGTCTGACGATGAAGTAAATGAGAAGTGGCCTACTCCAACAGCAAGGAGTTATTGGGTTTTTAATAGTCGTTGTGAAACGGAATTCTACAATGGTTTCCTTGAAAATCTCTGAAATGTCAATAATGCTAATGTTTCTAGCAGTGCTCTGTAAATTGCTGGTGTTGGGATATGGTACTGATGAGCGGAAGACGTTCATAGTTAGAGTTGACGGGGATTCAAAACCGGTAGCCTTTACTAAGAACGAGCACTGGTACAGATCGAGCCTTGCTGCTGTCAAGGGGCTGAAGGCAGAGTTGTCTGTGGATGGAGAAGATGATGGATTGCTTCATGTTTATCAGACTGTGTTGCATGGCTTCTCAGCAAGGCTAACAGAGGAGGAAGCCGCTCGGATGGAAAAAACACCCGGCGTTCTTGCTGTTTTTCCTGATCGTGCTCGCCAGCTGCAGACGACACGGTCTCCGCAGTTCGTCGGGCTTGAAAGGCCCAACGGAGGGGGACTGTGGGTGGAGTCCAACTACGGTTCTGATCTCGTGATCGGTGTCCTGGACACCGGTATTTGGCCGGAACGGCGGAGCTTCAGCGATCAAGACATGGGCCCTGTTCCCAAGAAGTGGAAAGGCGAGTGCGAGAGCGGGGTCAGTTTCCCCAGGTCGTTCTGCAATCGGAAGCTGGTGGGAGCGCGGTATTTTTACAGAGGCTACGAAGCAACAAGCGGTGCGATGAACGAAACCAATGAGTTTAGGTCGGCGCGCGATTCAGACGGCCATGGCACGCATACCGCTTCCACGGCCGCTGGCAGATATGTTTACAAAGCGAGCATGCTGGGCTACGCTGAGGGAATCGCCAAAGGAATGGCGCCCAAGGCCCGTATTGCCGTTTACAAGGTCTGCTGGTCGTCGGGTTGCTTTGATTCCGACATACTCTCAGCGCTCGACAAGGCGGTAGGCGACGGTGTTGATGTTATTTCGTTGTCTGTCGGAGGAAGCGTTGTTCCTTATTTTCTGGACAGCATTGCCATTGGCACCTTCGGTGCTGTGCAGAGGGGGGTGTTTGTTTCTGCATCGGCGGGAAACAGCGGCCCCGGGGATGGGACGGTGACTAACGTTGCTCCCTGGATAACCACGGTGGGTGCCGGCACTATGGATCGTAGCTTTCCTGCTGACATTGTGCTGGGCGACGGGAGTGTCATGCCAGGTGTGTCAATGTATAGCGGAAAGGGATTGGCCCCGGGACGACAGTTTCCTCTGGTGTATGCAGGTGATGCGGGTCGAGCCGAGAGCATGGATGCTTATTCCTCGTCACTGTGCATGGAAGGTTCGTTGGATCCCGAGGTCATTAAGGGGAAGATTGTCTTGTGTGAGCGCGGGAATAATCCCAGGGTGGTGAAGGGTTCTGTGGTCAAGCAAGCTGGAGGTGTGGGAATGATACTTTATAACAGCGCTTCTGATGGCGAAGGGCTTATTGCAGATCCCCATTTGCTGCCTGCGGCTGCAGTGGGTAGTGCTGGAGGGGATTCGATCCGTCGATACATTTTATCATCAAAAAATCCCACCGCTACCATAACATTCCATGGAACCGAATTGGGGGTCAAGCCTGCTCCTGTTGTGGCTTCATTTTCCGCCAGAGGTCCCAATCCGGAAACTGTAGAGATTCTCAAACCCGACATTATAGCCCCCGGTGTGAACATTCTGGCTGCTTGGACCGACGCTATTGGTCCGTCGGGGCTCTCGTTTGACCGAAGGCGAACAGAGTTCAATATAATTTCTGGAACCTCCATGGCCTGCCCTCATGTAAGTGGGGTTGCTGCGTTGCTCAAAGGAGCTCATCCCGACTGGAGCCCTGCAGCCATAAAATCGGCGCTAATGACGACTGCTTACATTCACGACAATAGGCTCCAGCCCTTGATCGATGAAGCAACGGGAAACGCTGCCACAGCAAAAGATTTCGGTTCTGGTCACGTGGATCCGCAGAAGGCCATGGATCCGGGGCTTGTTTACGATTTGGGCGTAGATGACTATGTCAACTTTCTCTGCAGCGTAAATTACACTGAGAAAGCCATCAGGGCTATAACTCGTAGAACTGTAGGCTGCTCTAGCCGAGGAAAACAGCCTGGGAATCTCAATTACCCTTCATTTGCCACTGTTTTCGATACCCGGGCCTCGAACCTGTCGACATTCTTCATCAGAACGGTCACCAATGTCGGGCCTCCCCTGTCAACTTACAGGGCCACGGTGATTGCTCCAAGAGGGGTCTCGGTGACAGTGAGGCCGAGGAAGCTGGAGTTTACAAAGAAAAACGAGAAACTGAGCTACATGCTGAGCGTCAGCGCCGAGCCTGTGAAACTTCTCCCGGGAAATTCAGAAACAGTATTTGGGCAACTGCTTTGGAGTGATGAGAAACATGTTGTGCAAAGCCCTATTGTTGTAACCAGGCAGAAGCCTTATTAACTATTATGGCTGCTTTTGGTCCTGGAACTTCTGGTATTAGCACAGAACAATTTTTATTGCTTCTTGTGTTCTACGATGTACAGAGTCCAGTTGAAGTGAAGGGGCAAGCTGCCTTCATACGATGCTTCTATATATTATCTATTTAAATTTTTAAGTCGGAAGTTTCCCACTTCCTTATTTTGGGTTTGTAGGTTCAAAAAATTCATAATGGTACGCTGCAAGAGCAGGGCTTTCTCCTATTTTATGTTTGCGTTGCGTTCTTTCTGTTTTCAATTTGTCATTACAAATTGTATTCAATCTTCTGTGAAAACAAAAGACCCAGGATTTCTAGGCTTGGATGATTATTAATAAGCAAAAGTGTTGGCCTAATT

Ace file of the UniGene sp_v2.0_unigene23542 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative subtilisin serine protease [Arabidopsis thaliana]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	subtilisin-like protease-like	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Phosphofructokinase domain	IPR000023	-	-
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3		IPR000991	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	GMP synthase, C-terminal	IPR001674	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	GMP synthase, N-terminal	IPR004739	-	-
Sma3	Domain of unknown function DUF591	IPR007649	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR011702	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Peroxisome membrane protein, Pex16	IPR013919	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-
Sma3		IPR018318	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPS1

Fln msg: your sequence is longer than subject: 810 - 690

Fln protein: MRSGLLQQQGVIGFLIVVVKRNSTMVSLKISEMSIMLMFLAVLCKLLVLGYGTDERKTFIVRVDGDSKPVAFTKNEHWYRSSLAAVKGLKAELSVDGEDDGLLHVYQTVLHGFSARLTEEEAARMEKTPGVLAVFPDRARQLQTTRSPQFVGLERPNGGGLWVESNYGSDLVIGVLDTGIWPERRSFSDQDMGPVPKKWKGECESGVSFPRSFCNRKLVGARYFYRGYEATSGAMNETNEFRSARDSDGHGTHTASTAAGRYVYKASMLGYAEGIAKGMAPKARIAVYKVCWSSGCFDSDILSALDKAVGDGVDVISLSVGGSVVPYFLDSIAIGTFGAVQRGVFVSASAGNSGPGDGTVTNVAPWITTVGAGTMDRSFPADIVLGDGSVMPGVSMYSGKGLAPGRQFPLVYAGDAGRAESMDAYSSSLCMEGSLDPEVIKGKIVLCERGNNPRVVKGSVVKQAGGVGMILYNSASDGEGLIADPHLLPAAAVGSAGGDSIRRYILSSKNPTATITFHGTELGVKPAPVVASFSARGPNPETVEILKPDIIAPGVNILAAWTDAIGPSGLSFDRRRTEFNIISGTSMACPHVSGVAALLKGAHPDWSPAAIKSALMTTAYIHDNRLQPLIDEATGNAATAKDFGSGHVDPQKAMDPGLVYDLGVDDYVNFLCSVNYTEKAIRAITRRTVGCSSRGKQPGNLNYPSFATVFDTRASNLSTFFIRTVTNVGPPLSTYRATVIAPRGVSVTVRPRKLEFTKKNEKLSYMLSVSAEPVKLLPGNSETVFGQLLWSDEKHVVQSPIVVTRQKPY*

Protein Length: 811

Fln nts: ATGGGGGTATAGTCTTAATTCAAAGACTTGAAACAAAGTTTCTAGAATGGAATACCCTTGAGTCAAATAAAATTATGATTTTGTATTTAGTGGCTCCGCTGTGAATCATCGAGCTGGACTGCAAAGCGGGAGCTTCGATGCACGTTGAGAAATGCGTTTGGAAAAAGTTGTGCGCGTACGAATAAGTTTTGTTCGCAATAATCGTTACTTAATTTGCAAATAAATGCTGTCTCGTTCTGAGGCTGTGACCAACGGCACTGTGAACTGGGAATTTGAGGCGCTGAAGAAGCTTTTCACTGGCAGCTGGATCTATGAGGGTGAATGGGCATTTGAAAATGGCCTTTGGAGATGTATCGATGGCTGAGATAAGCGGACGGCTCCCTGGCTTCCGGCAGTCTGGTCTGATTGACTGTTGAGGTATTGTACTAGTTGGGGAAAATTTAATGGGTCTGACGATGAAGTAA_-_ATGAGAAGTGGCCTACTCCAACAGCAAGGAGTTATTGGGTTTTTAATAGTCGTTGTGAAACGGAATTCTACAATGGTTTCCTTGAAAATCTCTGAAATGTCAATAATGCTAATGTTTCTAGCAGTGCTCTGTAAATTGCTGGTGTTGGGATATGGTACTGATGAGCGGAAGACGTTCATAGTTAGAGTTGACGGGGATTCAAAACCGGTAGCCTTTACTAAGAACGAGCACTGGTACAGATCGAGCCTTGCTGCTGTCAAGGGGCTGAAGGCAGAGTTGTCTGTGGATGGAGAAGATGATGGATTGCTTCATGTTTATCAGACTGTGTTGCATGGCTTCTCAGCAAGGCTAACAGAGGAGGAAGCCGCTCGGATGGAAAAAACACCCGGCGTTCTTGCTGTTTTTCCTGATCGTGCTCGCCAGCTGCAGACGACACGGTCTCCGCAGTTCGTCGGGCTTGAAAGGCCCAACGGAGGGGGACTGTGGGTGGAGTCCAACTACGGTTCTGATCTCGTGATCGGTGTCCTGGACACCGGTATTTGGCCGGAACGGCGGAGCTTCAGCGATCAAGACATGGGCCCTGTTCCCAAGAAGTGGAAAGGCGAGTGCGAGAGCGGGGTCAGTTTCCCCAGGTCGTTCTGCAATCGGAAGCTGGTGGGAGCGCGGTATTTTTACAGAGGCTACGAAGCAACAAGCGGTGCGATGAACGAAACCAATGAGTTTAGGTCGGCGCGCGATTCAGACGGCCATGGCACGCATACCGCTTCCACGGCCGCTGGCAGATATGTTTACAAAGCGAGCATGCTGGGCTACGCTGAGGGAATCGCCAAAGGAATGGCGCCCAAGGCCCGTATTGCCGTTTACAAGGTCTGCTGGTCGTCGGGTTGCTTTGATTCCGACATACTCTCAGCGCTCGACAAGGCGGTAGGCGACGGTGTTGATGTTATTTCGTTGTCTGTCGGAGGAAGCGTTGTTCCTTATTTTCTGGACAGCATTGCCATTGGCACCTTCGGTGCTGTGCAGAGGGGGGTGTTTGTTTCTGCATCGGCGGGAAACAGCGGCCCCGGGGATGGGACGGTGACTAACGTTGCTCCCTGGATAACCACGGTGGGTGCCGGCACTATGGATCGTAGCTTTCCTGCTGACATTGTGCTGGGCGACGGGAGTGTCATGCCAGGTGTGTCAATGTATAGCGGAAAGGGATTGGCCCCGGGACGACAGTTTCCTCTGGTGTATGCAGGTGATGCGGGTCGAGCCGAGAGCATGGATGCTTATTCCTCGTCACTGTGCATGGAAGGTTCGTTGGATCCCGAGGTCATTAAGGGGAAGATTGTCTTGTGTGAGCGCGGGAATAATCCCAGGGTGGTGAAGGGTTCTGTGGTCAAGCAAGCTGGAGGTGTGGGAATGATACTTTATAACAGCGCTTCTGATGGCGAAGGGCTTATTGCAGATCCCCATTTGCTGCCTGCGGCTGCAGTGGGTAGTGCTGGAGGGGATTCGATCCGTCGATACATTTTATCATCAAAAAATCCCACCGCTACCATAACATTCCATGGAACCGAATTGGGGGTCAAGCCTGCTCCTGTTGTGGCTTCATTTTCCGCCAGAGGTCCCAATCCGGAAACTGTAGAGATTCTCAAACCCGACATTATAGCCCCCGGTGTGAACATTCTGGCTGCTTGGACCGACGCTATTGGTCCGTCGGGGCTCTCGTTTGACCGAAGGCGAACAGAGTTCAATATAATTTCTGGAACCTCCATGGCCTGCCCTCATGTAAGTGGGGTTGCTGCGTTGCTCAAAGGAGCTCATCCCGACTGGAGCCCTGCAGCCATAAAATCGGCGCTAATGACGACTGCTTACATTCACGACAATAGGCTCCAGCCCTTGATCGATGAAGCAACGGGAAACGCTGCCACAGCAAAAGATTTCGGTTCTGGTCACGTGGATCCGCAGAAGGCCATGGATCCGGGGCTTGTTTACGATTTGGGCGTAGATGACTATGTCAACTTTCTCTGCAGCGTAAATTACACTGAGAAAGCCATCAGGGCTATAACTCGTAGAACTGTAGGCTGCTCTAGCCGAGGAAAACAGCCTGGGAATCTCAATTACCCTTCATTTGCCACTGTTTTCGATACCCGGGCCTCGAACCTGTCGACATTCTTCATCAGAACGGTCACCAATGTCGGGCCTCCCCTGTCAACTTACAGGGCCACGGTGATTGCTCCAAGAGGGGTCTCGGTGACAGTGAGGCCGAGGAAGCTGGAGTTTACAAAGAAAAACGAGAAACTGAGCTACATGCTGAGCGTCAGCGCCGAGCCTGTGAAACTTCTCCCGGGAAATTCAGAAACAGTATTTGGGCAACTGCTTTGGAGTGATGAGAAACATGTTGTGCAAAGCCCTATTGTTGTAACCAGGCAGAAGCCTTATTAA___CTATTATGGCTGCTTTTGGTCCTGGAACTTCTGGTATTAGCACAGAACAATTTTTATTGCTTCTTGTGTTCTACGATGTACAGAGTCCAGTTGAAGTGAAGGGGCAAGCTGCCTTCATACGATGCTTCTATATATTATCTATTTAAATTTTTAAGTCGGAAGTTTCCCACTTCCTTATTTTGGGTTTGTAGGTTCAAAAAATTCATAATGGTACGCTGCAAGAGCAGGGCTTTCTCCTATTTTATGTTTGCGTTGCGTTCTTTCTGTTTTCAATTTGTCATTACAAATTGTATTCAATCTTCTGTGAAAACAAAAGACCCAGGATTTCTAGGCTTGGATGATTATTAATAAGCAAAAGTGTTGGCCTAATT

Fln Alignment:

Contig23542___MLMFLAVLCKLLVLGYGTDERKTFIVRVDGDSKPVAFTKNEHWYRSSLAAVKGLKAELSVDGEDDGLLHVYQTVLHGFSARLTEEEAARMEKTPGVLAVFPDRARQLQTTRSPQFVGLERPNGGGLWVE-SNYGSDLVIGVLDTGIWPERRSFSDQDMGPVPKKWKGECESGVSFPRSFCNRKLVGARYFYRGYEATSGAMNETNEFRSARDSDGHGTHTASTAAGRYVYKASMLGYAEGIAKGMAPKARIAVYKVCWSSGCFDSDILSALDKAVGDGVDVISLSVGGSVVPYFLDSIAIGTFGAVQRGVFVSASAGNSGPGDGTVTNVAPWITTVGAGTMDRSFPADIVLGDGSVMPGVSMYSG-KGLAPGRQFPLVYAGDAGRAESMDAYSSSLCMEGSLDPEVIKGKIVLCERGNNPRVVKGSVVKQAGGVGMILYNSASDGEGLIADPHLLPAAAVGSAGGDSIRRYILSSKNPTATITFHGTELGVKPAPVVASFSARGPNPETVEILKPDIIAPGVNILAAWTDAIGPSGLSFDRRRTEFNIISGTSMACPHVSGVAALLKGAHPDWSPAAIKSALMTTAYIHDNRLQPLIDEATGNAATAKDFGSGHVDPQKAMDPGLVYDLGVDDYVNFLCSVNYTEK
C0PPS1_______________VLLVLGCLATVLAAISHDGVKKTYVVHMAKSQMPAGFTSHEHWYAS---AVKSVLSE----EEEPSILYNYDDAFHGFAARLNAAQAEALEKTHGILGIYPETVYELHTTRTPQFLGLETAESG-MWPEKANFGHDVVIGVLDTGVWPESLSFNDRGMGPVPAHWKGACESGTNFTASHCNKKLIGARFLSRGYEAAVGPINETAEFRSPRDQDGHGTHTASTAAGAVVLKADLVGYAKGTARGMATRARIAAYKVCWVGGCFSTDILAALDKAVADGVNVLSLSLGGGLEPYYRDSISLGTFGAMEKGIFVSCSAGNGGPDPISLSNVAPWIATIGAGTLDRDFPAYVELGNGLNFTGVSLYHGRRGLPSGEQVPLVYFGSNTSAGSRSA--TNLCFAGSLDRKLVAGKMVVCDRGISARVAKGAVVKSAGGVGMILANTDANGEELVADCHLLPASAVGEANGDAIKHYITSTKNPTATIHFGGTVLGVKPSPVVAAFSSRGPNLVNPEILKPDMIAPGLNILAAWTGITGPTGLSDDLRRVKFNILSGTSMSCPHVTGIAALMKGAHPEWSPAAIKSALMTTAYTVDNMGHKIEDSATANASTPFDHGAGHVDPKSALNPGLIYDISADDYIEFLCSLNYRRR

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
326	33			66	1.0
353		33	66		1.0
376		33		66	0.997452
377	66	33			0.997452
558		12		87	0.992554
672			18	81	0.999994
724		16	83		0.999991
757	10	90			0.90298
812		88		11	0.923564
835		12	87		0.992554
836		12	87		0.992554
847		14		85	0.993533
848		14		85	0.993533
849	14	85			0.993533
1626		20		80	0.995493
1729		66	33		1.0
1854	90		10		0.90298
1866	90		10		0.90298
1867		90		10	0.90298
1868		90		10	0.90298
2085	90		10		0.90298
2086			10	90	0.90298
2280	77		22		0.999999
2287	88			11	0.923564
2307	12		87		0.992554
2308		12	87		0.992554
2310		87		12	0.992554
2332		14		85	0.993533
2383		57		42	1.0
2442		80		20	0.995493
2558	14			85	0.993533
2687	83		16		0.994512
2694		83	16		0.994512
2752	66			33	1.0
2753		66		33	1.0
2758		33		66	1.0
2760	75		25		0.996473
2762	75	25			0.996473
2764		75	25		0.996473
2765		75		25	0.996473
2791	25		75		0.996473
2864	50		50		1.0
2874			75	25	0.996473
2875		75	25		0.996473
2876	25	75			0.996473
2885		75		25	0.996473
2887	25		75		0.996473
2890	75			25	0.996473
2891		25	75		0.996473
2892	25	75			0.996473
2895	20			80	0.995493
2897		80	20		0.995493
2929			75	25	0.996473
2959	25		75		0.996473
3021		40	60		1.0
3022		40	60		1.0
3023		40		60	1.0
3026		60		40	1.0
3027	66		33		0.997452
3101	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain