SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23524

Length: 787 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene23524 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Multicopper oxidase, type 1 [Medicago truncatula]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	l-ascorbate oxidase homolog	-	-	91%

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3		IPR013753	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Full-Lengther Next Prediction

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
610		18	81		0.999994
619			90	10	0.90298
620		10	90		0.90298
621	10	90			0.90298
622		10		90	0.90298
625	90	10			0.90298
626		90	10		0.90298
634			88	11	0.923564
637	88		11		0.923564
638			88	11	0.923564
641		11	88		0.923564
642	11			88	0.923564
643	11			44	1.0
645		11		88	0.923564
648		11		88	0.923564
649	11		88		0.923564
651	11		88		0.923564
653		22	77		0.999999
654	88		11		0.923564
656	88			11	0.923564
657			88	11	0.923564
662		12	87		0.992554
663	12		87		0.992554
668			77	11	0.968132
669	88			11	0.923564
736		90	10		0.90298
737	10	90			0.90298
741	10		90		0.90298
742		10		90	0.90298
744	10		90		0.90298
746	90		10		0.90298
749			20	80	0.999996
753	11			88	0.923564
755	87		12		0.992554
757	87	12			0.992554
758	87		12		0.992554
766	83	16			0.994512
772	83			16	0.994512
773			83	16	0.994512
774		83	16		0.994512
778		16	83		0.994512
780	16			83	0.994512
781		83	16		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
673	684	AT AT AT AT AT AT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain