SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23329

Length: 1095 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23329

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	22 kDa polypeptide [Nicotiana tabacum] emb\|CAB91553.1\| DREPP4 protein [Nicotiana tabacum]	-	-	1.0e-12	32%
FL-Next	sp=Salt stress root protein RS1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	43%
Blast2go	plasma-membrane associated cation-binding protein 1	-	-	2.748e-18	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	2.748e-18	61%
Blast2go	response to cold	GO:0009409	Biological Process	2.748e-18	61%
Blast2go	copper ion binding	GO:0005507	Molecular Function	2.748e-18	61%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	2.748e-18	61%
Blast2go	phosphatidylinositol-3,4,5-trisphosphate binding	GO:0005547	Molecular Function	2.748e-18	61%
Blast2go	phosphatidylinositol-3,5-bisphosphate binding	GO:0080025	Molecular Function	2.748e-18	61%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	2.748e-18	61%
Blast2go	vacuole	GO:0005773	Cellular Component	2.748e-18	61%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.748e-18	61%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.748e-18	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	DREPP plasma membrane polypeptide	IPR008469	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
153			33	66	0.997452
168	66		33		0.997452
174	66	33			0.997452
176	33		66		0.997452
212	33		66		0.997452
265	33		66		0.997452
269			33	66	0.997452
277	66			33	0.997452
298	75		25		0.996473
315	25	75			0.996473
335		25		75	0.996473
366	62	37			1.0
370	12			87	0.992554
371			87	12	0.992554
372	85			14	0.993533
373	85	14			0.993533
374	85		14		0.993533
378	83		16		0.994512
380	14			85	0.993533
592		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain