SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23315

Length: 1182 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene23315 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative acid phosphatase (Fragment) n=1 Tax=Pinus pinaster RepID=Q8RVJ4_PINPS	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	acid phosphatase 1	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Acid phosphatase (Class B)	IPR005519	-	-
Sma3	Acid phosphatase, plant	IPR010028	-	-
Sma3	Vegetative storage protein/acid phosphatase	IPR014403	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA42

Fln msg:

Fln protein: MGRLSVKYISILAMAFMLASATIFKFLLFLFLFLLSTAAANGSSKSKHCGRSASSRCPAWRLSVETGNLKDWDVVPAKCVSYVEKYMETGGQYWEDSNVAVVNILKYAESLTLAGDGMDAWVFDADETLLSNIPYYENYEYGGLAFDSKTFDAWVLEMKAPALPSSLLLFDRLLTHGFQIFILTGRDEAQRNVSVQNLVEAGYKGWAGLILRQESDQGTSASVYKPKKRGELVKKGYRLWGSVGDQWSDLSGPYEASRSFKLPNPMYYIG*

Protein Length: 272

Fln nts: AC_-_ATGGGGAGGCTAAGCGTCAAATATATCTCAATTCTTGCTATGGCGTTCATGTTAGCATCGGCTACCATATTCAAGTTTCTTTTGTTCCTCTTCCTGTTCCTGCTCAGCACGGCTGCAGCCAATGGGTCGTCCAAGTCGAAGCATTGCGGCCGTTCTGCCTCCTCCCGGTGCCCGGCCTGGAGATTGAGCGTGGAGACAGGCAACCTTAAAGATTGGGATGTCGTCCCAGCAAAGTGCGTGAGCTATGTGGAGAAATATATGGAGACAGGAGGCCAGTATTGGGAGGATTCCAATGTAGCAGTCGTAAATATTTTGAAGTATGCGGAGTCGCTCACGCTCGCGGGAGACGGGATGGATGCGTGGGTGTTCGATGCTGACGAAACTCTGCTATCCAATATCCCTTATTACGAAAATTATGAATATGGGGGCTTGGCATTCGATTCGAAAACATTTGATGCGTGGGTATTAGAAATGAAAGCACCTGCGCTGCCGTCGTCTCTGTTACTTTTTGACCGTTTGTTAACTCACGGCTTCCAGATCTTCATTCTAACTGGCCGAGACGAAGCCCAGCGGAATGTATCGGTCCAGAATCTGGTTGAGGCTGGCTACAAGGGCTGGGCTGGTTTGATACTGAGGCAGGAGAGCGATCAGGGCACCTCGGCGAGTGTGTACAAGCCCAAGAAGAGGGGAGAGCTGGTGAAGAAAGGTTATCGTTTATGGGGAAGCGTGGGCGATCAGTGGAGCGATTTGAGCGGACCCTATGAGGCATCGCGGTCTTTCAAGCTTCCCAACCCTATGTATTATATTGGTTGA___AGTAACCTGCAGAAGTACATCTCGTATCTACGTGACCGATACAATCCGTTTTCGTTTCAGCAATGCGACCTCATCTAATTTCCTCCATCTCCATCTATCTGTTTCTATGAAAAAGTAGTATTTCTGAGCCAAATTATTTTTTAGGTTTTGTCATGGACTGACCATGTTAATGAACATGGTTATTCTCTTTATGTGATTGCTTCACAATGTCAATGTCGATGTCAATGTTGTCGTCTCTAAATTCCTGTAATGTTGATGCCAAAGTTTTCCATTATGTCCTGTAATGTGAATGTCAAGTTTTGTATTATGTAACTAATACTCTTTTTGAAAACGAATAGAAGGAAAAATAATCCCCTCTTTTTTTCAC

Fln Alignment:

Contig23315___MAFMLASATIFKXXXXXXXXXLSTAAANGSSKSKHCGRSASSRCPAWRLSVETGNLKDWDVVPAKCVSYVEKYMETGGQYWEDSNVAVVNILKYAESLTLAGDGMDAWVFDADETLLSNIPYYENYEYGGLAFDSKTFDAWVLEMKAPAXXXXXXXXXXXLTHGFQIFILTGRDEAQRNVSVQNLVEAGYKGWAGLILRQESDQGTSASVYKPKKRGELVKKGYRLWGSVGDQWSDLSGPYEASRSFKLPNPMYYI
D5AA42_______________MAFVLASVAIFPFLLFLLLL--GTASANGLSKSKLSGRSAS-RCEGWRLSVESGNLRDWDVVPSKCVGYVQKYMMTAGQYWEDSKVAVFTILEYVKTLKLVGDGKDAWVFDIDETLLSNIPYYQQHEYGGKAFDSKTFEAWVLEMKSPALPSSLLLYNRLLARGFKIFLLTGRDESQRNGTVHNLFQAGYKGWAGLILRGVNEQGSQASAYKPEKRAELVKKGYRLWGSVGDQWSDLSGPYEASRSFKLPNPMYYI

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
852	12		87		0.999964
1138	6	93			0.999264
1142	93			6	0.999264
1178	10	90			0.90298
1179	90		10		0.90298
1181	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain