SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23285

Length: 457 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene23285
CAATTTTGTTTGAGATCTTGCTCTGTATATTTTGATTAGAGGAGAAATGGATATTCAGGCTTTAATTCATAGACCAGATTTCACACTGGAATTCTCGAAACTAGTATTGGAAACAAGCATTGGGCAGAATGCTGTTTTCTGCCCATTAAGCATAACTGTGGCATTGAGCCTGGCTGCAGCCGGTTCAAAGGGCCCAACACTCGACCAGATTCGCACTTGTCTGAAGCTGAAGGAGGGTCCCCAATTCCATGAATTCTCTTCTCAACTTGTTAATGCGGTTTTGATCGATGGAAGTCCTAGCGGAGGGCCTCACTTATCGTTTGTTAACGGAGTATGGGTGGATAAATCCATGCCGCTGAAGCCCACTTTTGGAGATATTGTGAAGAAACAGTACAACACTGAAGCTCGACTGGTGGATTTTCTGAATAAGTCGAATGAAGTTAGAATGGAAGTTCGC

Ace file of the UniGene sp_v2.0_unigene23285

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serpin-like protein [Citrus x paradisi]	-	-	1.0e-24	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	protein	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	cysteine-type endopeptidase inhibitor activity	GO:0004869	Molecular Function	0.0	63%
Blast2go	apoplast	GO:0048046	Cellular Component	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	0.0	-
Sma3	Protease inhibitor I4, serpin, plant	IPR015554	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPD1

Fln msg: Distance to subject end: 250 aas, your sequence is shorter than subject: 137 - 388

Fln protein: MDIQALIHRPDFTLEFSKLVLETSIGQNAVFCPLSITVALSLAAAGSKGPTLDQIRTCLKLKEGPQFHEFSSQLVNAVLIDGSPSGGPHLSFVNGVWVDKSMPLKPTFGDIVKKQYNTEARLVDFQNKSNEVRMEVR

Protein Length: 138

Fln nts: CAATTTTGTTTGAGATCTTGCTCTGTATATTTTGATTAGAGGAGAA_-_ATGGATATTCAGGCTTTAATTCATAGACCAGATTTCACACTGGAATTCTCGAAACTAGTATTGGAAACAAGCATTGGGCAGAATGCTGTTTTCTGCCCATTAAGCATAACTGTGGCATTGAGCCTGGCTGCAGCCGGTTCAAAGGGCCCAACACTCGACCAGATTCGCACTTGTCTGAAGCTGAAGGAGGGTCCCCAATTCCATGAATTCTCTTCTCAACTTGTTAATGCGGTTTTGATCGATGGAAGTCCTAGCGGAGGGCCTCACTTATCGTTTGTTAACGGAGTATGGGTGGATAAATCCATGCCGCTGAAGCCCACTTTTGGAGATATTGTGAAGAAACAGTACAACACTGAAGCTCGACTGGTGGATTTTCaGAATAAGTCGAATGAAGTTAGAATGGAAGTTCGC

Fln Alignment:

Contig23285___MDIQALIH-RPDFTLEFSKLVLETSIGQNAVFCPLSITVALSLAAAGSKGPTLDQIRTCLKLKEGPQFHEFSSQLVNAVLIDGSPSGGPHLSFVNGVWVDKSMPLKPTFGDIVKKQYNTEARLVDFQNKSNEVRMEV
B8LPD1_______________MDIQSSIHGQTEFTLEFSKRVLETSIGQNAVFSPLSISVALSLAAAGSKGPTLDQIRTCLKLKEGPQSHEFSSQLVNVVLIDGSPNGGPQLSFVNGVWVDKSMPLKPSFGDIVKKQYNTEARLVDFLNKSNEVRLEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain