SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23250

Length: 987 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23250

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Extensin_2 multi-domain protein	-	-	1.0e-11	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%

Full-Lengther Next Prediction

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
30		66	33		0.997452
31	66			33	0.997452
33		66	33		0.997452
34	66			33	0.997452
40	66			33	0.997452
41		66	33		0.997452
42		66	33		0.997452
45			14	85	0.993533
49	14	85			0.993533
100	12	87			0.992554
102		87	12		0.992554
103		87	12		0.992554
104	87		12		0.992554
138			90	10	0.90298
139	90		10		0.90298
140	90		10		0.90298
141	90		10		0.90298
147	10	90			0.90298
148		90		10	0.90298
149	90		10		0.90298
150		90	10		0.90298
151		90	10		0.90298
253	90		10		0.90298
266			16	83	1.0
268	83	16			1.0
273	83	16			1.0
275	83			16	1.0
277	83		16		1.0
280	83		11		0.999887
282		11		88	0.999937
284	5	11		83	0.999887
285	11	5		83	0.999887
335		7	92		0.999664
336	84		7	7	0.99801
337		7		92	0.999664
338		7	7	84	0.99801
340		84	15		1.0
342	84	15			1.0
348			84	15	1.0
349	84	15			1.0
351	84	15			1.0
479		11		88	0.999937

SSRs (tot: 1)

Start position	End position	Sequence	Length
142	153	CCA CCA CCA CCA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain