SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23248

Length: 958 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23248

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RTDK1_23_E11.b1_A029 Roots, dark Pinus taeda cDNA clone RTDK1_23_E11_A029 3', mRNA sequence.	-	-	0.0	92%
FL-Next	tr=TRAUCO; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	96%

Full-Lengther Next Prediction

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
49	75	25			0.996473
51		75		25	0.996473
52	75	25			0.996473
56		75	25		0.996473
60	75			25	0.996473
65	75			25	0.996473
68	75	25			0.996473
72		25		75	0.996473
73	28	71			1.0
105	88	11			0.923564
108		88	11		0.923564
113		11		88	0.923564
116			11	88	0.923564
117			11	88	0.923564
118		11		88	0.923564
119			88	11	0.923564
122	88	11			0.923564
123	11			88	0.923564
124	88	11			0.923564
127	18		81		0.999994
143			85	14	0.999981
144	14	85			0.999981
185		14		85	0.999981
212	23		76		1.0
229	23		76		1.0
234		15		84	0.999986
247	25			75	1.0
248	25			75	1.0
372	27			72	1.0
388	83	16			0.994512
400	60		20	20	0.99255
403			20	80	0.995493
414		75		25	0.996473
418		20		80	0.995493
421		20		80	0.995493
422			20	80	0.995493
425	20		80		0.995493
426	80	20			0.995493
427	80	20			0.995493
428	80			20	0.995493
431			20	80	0.995493
432		20	80		0.995493
434			20	80	0.995493
436		20	80		0.995493
437	20		80		0.995493
438		20		80	0.995493
439			80	20	0.995493
446			25	75	0.996473
451		50		50	1.0
453	50	50			1.0
475		25		75	0.996473
477	25		75		0.996473
481			66	33	0.997452
482	66			33	0.997452
483	66	33			0.997452
485	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain