SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23246

Length: 1032 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23246

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gb\|AAF64534.1 n=3 Tax=Arabidopsis RepID=Q9FHA6_ARATH	-	-	1.0e-15	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	ralf precursor	-	-	2.8026e-45	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rapid ALkalinization Factor	IPR008801	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 70)

Position	A %	C %	G %	T %	Probability
156	80	20			0.995493
160			20	80	0.995493
162	80		20		0.995493
167		80		20	0.995493
174			80	20	0.995493
176	20		80		0.995493
179			80	20	0.995493
180		20	80		0.995493
305	86			13	0.999973
458		14		85	0.993533
459		85	14		0.993533
460		85		14	0.993533
462	14	85			0.993533
463		14		85	0.993533
464	85	14			0.993533
465	85			14	0.993533
466			85	14	0.993533
470		85		14	0.993533
473	85			14	0.993533
475	14	85			0.993533
477	85			14	0.993533
478		14	85		0.993533
507	85	5			0.999793
509		15	85		1.0
510	90		10		0.999898
512	90		10		0.999898
514		10	90		0.999898
515		10	90		0.999898
516			90	10	0.999898
519	83		12		1.0
520	87	12			1.0
522		87	12		1.0
524		12	83		1.0
526		12	87		1.0
527			87	12	1.0
528	83	16			1.0
529	12		83	4	1.0
532		8		91	0.999766
632		8	91		0.999766
634		4	86	8	0.999539
635	91	8			0.999807
637			86	13	1.0
638		91	8		0.999807
639	13	86			1.0
640		8		91	0.999807
641		8		91	0.999807
642	91			8	0.999807
644			8	91	0.999807
645	91		8		0.999807
647	91			8	0.999807
648		91	8		0.999807
651	8		91		0.999807
652	77	22			1.0
654	77			22	1.0
655		22		77	1.0
656	7		14	77	1.0
657			75	20	1.0
658			25	75	1.0
659	16			83	1.0
660	79	16		4	1.0
662			82	17	1.0
663			82	17	1.0
667	9		72	18	1.0
668	72		27		1.0
669			72	27	1.0
670		18		72	1.0
671	18		81		1.0
672		18	81		1.0
673			81	18	1.0
675	19	80			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
318	331	TGC TGC TGC TGC TG	14

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain