SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23220

Length: 1166 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23220

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI	-	-	85%
FL-Next	sp=Probable phospholipid hydroperoxide glutathione peroxidase; Citrus sinensis (Sweet orange).	-	-	82%
Blast2go	glutathione peroxidase-like protein	-	-	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glutathione peroxidase	IPR000889	-	0.0	-
Sma3		IPR012335	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
362	20	80			0.995493
365		80	20		0.995493
366			25	75	0.996473
648			40	60	1.0
714		20		80	0.995493
715	80		20		0.995493
719	75			25	0.996473
722	75	25			0.996473
723	75	25			0.996473
724			75	25	0.996473
728			25	75	0.996473
730	75			25	0.996473
733	75			25	0.996473
734	75	25			0.996473
890			11	88	0.923564
966	90	9			0.999872

SSRs (tot: 1)

Start position	End position	Sequence	Length
943	955	TCA TCA TCA TCA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain