SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23216

Length: 1143 nt

Origin of reads: Inia v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23216

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Structural molecule, putative n=1 Tax=Ricinus communis RepID=B9SRI7_RICCO	-	-	72%
FL-Next	sp=Probable plastid-lipid-associated protein 4, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	65%
Blast2go	probable plastid-lipid-associated protein chloroplastic-like	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, N-terminal	IPR018164	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LU85

Fln msg:

Fln protein: MESMAGKCFYHPLQSAVPLNESNTRLAWVRPSKVCRIRNNVSFSKIGFGSGIGRPLKAQVQAQASLFPFLNKRKDTTVVKEELLEAIGPLDRGAEATPEDKYRVDQIAQELEVINPTKGPLQSPLLNGKWELLYTTSATILKSQRPKFLRPNGKIYQAINADTLRAQNLETWPFFNQVTANLTPLSGKKVAVKFDKFKIASLISIKAPDRARGELEITYVDDELRISRGDKGNLFILRMVDPTYRVPL*

Protein Length: 250

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTGATTTGTTTCGTCCACACATTGTTCAGTATAGCTGCCTGTGTTATGTCCGTGTGACCTTTTCTTCACTC_-_ATGGAAAGCATGGCCGGCAAATGTTTTTATCACCCACTTCAATCTGCTGTACCTCTAAATGAATCGAATACCAGATTAGCCTGGGTTCGGCCATCAAAGGTGTGCAGAATTAGAAATAACGTAAGCTTCAGCAAGATAGGTTTTGGTTCTGGTATTGGACGGCCTTTAAAGGCGCAGGTGCAGGCACAGGCATCTCTGTTTCCCTTCCTAAACAAGAGAAAAGACACAACTGTTGTGAAAGAGGAGCTGTTGGAAGCCATCGGACCATTGGACAGGGGGGCTGAAGCAACTCCCGAGGACAAGTACCGCGTCGATCAGATTGCACAGGAACTAGAAGTGATTAATCCAACTAAAGGACCTCTTCAGTCTCCCTTGTTAAATGGAAAATGGGAGCTTTTGTACACTACTTCAGCGACAATTCTAAAGAGTCAGCGACCAAAATTTTTAAGGCCAAATGGGAAAATCTATCAAGCAATCAATGCTGATACTCTTAGAGCTCAAAATTTGGAGACTTGGCCTTTCTTTAATCAGGTAACGGCAAATTTAACCCCTCTCAGTGGAAAGAAGGTAGCAGTAAAATTTGACAAGTTCAAGATTGCCAGCTTGATAAGTATAAAGGCACCTGATCGAGCTCGAGGGGAGTTAGAAATCACATATGTTGATGATGAATTGAGGATTTCTCGTGGTGACAAGGGCAATTTATTTATATTACGCATGGTTGATCCTACTTATAGAGTTCCATTATAA___AACCCCATTTGATCTGATGTGCTAATAATTTTTTGTTTACTTTCCTTGAATTGAAGATTGTTAAAAGAAGCAACTTTGAAAAACTTTAGTTCCACCTTTCTATTTAAGAAGCTTGTAAAAGGTGGAGTTGCCTGATTGGAATTTTATTTTTCTTAAAGTGTAAGTTCCCAACATAATAGAGATGATGACTTAGTTCTACAAATCTTAATTTTACAAGATGGTATTGTTTTATGTTTGTAGGCCCCTTTGTTTTGTTTCTTTGATCAATTGAGAGAACAGATGGTAAAGCTAGAACATAA

Fln Alignment:

Contig23216___VKEELLEAIGPLDRGAEATPEDKYRVDQIAQELEVINPTKGPLQSPLLNGKWELLYTTSATILKSQRPKFLRPNGKIYQAINADTLRAQNLETWPFFNQVTANLTPLSGKKVAVKFDKFKIASLISIKAPDRARGELEITYVDDELRISRGDKGNLFILRMVDPTYRVPL
Q9LU85_______________LKQELLEAIEPLERGATASPDDQLRIDQLARKVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITN-YQSINVDTLKVQNMETWPFYNSVTGDIKPLNSKKVAVKLQVFKILGFIPIKAPDSARGELEITYVDEELRLSRGDKGNLFILKMFDPTYRIPL

SNPs (tot: 3)

Position	A %	G %	T %	Probability
1075	12	87		0.992554
1076	14		85	0.993533
1077		14	85	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain