SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23150

Length: 841 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23150

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Photosystem I subunit H n=1 Tax=Lycoris radiata RepID=D1MFT3_LYCRD	-	-	1.0e-31	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	h chain improved model of plant photosystem i	-	-	0.0	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem I PsaH, reaction centre subunit VI	IPR004928	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
76	5	82	11		0.999919
711		4	2	94	0.967557
713	2			92	0.990091
714	2	11		85	1.0
718		11		83	0.999887
724	11	88			0.923564
726	28	71			1.0
729	16			83	0.994512
730	16			83	0.994512
780		66		33	0.997452
782			66	33	0.997452
783		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
783	800	ATTTTT ATTTTT ATTTTT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain