SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23130

Length: 1950 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene23130
GTCCAGACCTACAGGGTTTACTTGCATTGTTCCACTGATAACTTCTCTGGCAGCAAGCCGCGGCCAGAATGGATTTCTCGATACCCATATGAATTTTCATGACACAAATGAATTTTCTCGGCAGCCAATTCCATTTTCACCAGCTGCAGATTCGCTTTCGTGTCCAAAAGTGACACGGTAGGTTCCGGGTTCGAGTACATCGGTGGTACTTTTCGGGTTTCTGAAGATGCATGCGGTTATGGGCAGTGACGTTGCTGGTCCTGTGCTTGGCAGAACTCTTGACCAGCGCTGCGGCTCATTTGGCTTCAGGGCATTATTTATTCAGCATTGCAGTGGCGTTTGACATTTTGTTGAAATTCTGAATAATCATCGTCTGAAGAGGTTTAGGGCATTGCGGGCAGTGGCAGAGAATTACAACAAACCAAAGATTGTGGTCTCTGAAGGGAGTGGAGATATAGGAAATGGACCTTATCTTGAGGGCAATGAACTGGTTCCAATTGTGCTGGTTCATGGGATTTTTGGCTTCGGAAAAGGGAAACTGGGTGTGGTGTCGTACTGGGCGGGGGCTGAAAAGAAGGACGACGGTGTGCTTGTTCCTGATTTGGGTTCTCTGCATTTATGATAGGGCTTGAGAACTTTTCTACTACTTAAAAGGTGGAACAGTAGATTATAGTGAAGAACACAGTGCCCAATATGGCCATTCCCTCTTTGCCAGGAATTATGAGCAAGGTAAATGAAGATAAGGGTTCAGCCTTTAACCATGAAATGTCTTCCACAAGATATCTTGGCTGAAACTATAAGCATTCATTGCTTTAGTTTGAAATTTTACAGGGTATTATCCTGAATGGGATGAGAATCATCCAGTGTTCAAGTTGTTAGGGTCCTGCACAATATGCTTACTGAACAAGTAATCCAGTCACTATTATTCAGCATAAATTTGCTTTCCCATGGGTAGCAATGCTGAAAAGTTGACAAGTTTTGCCTTTACAATGCTAGAATTATCTTTATGCAGAAATTCCAGGGATTTTATAACAGTTCCGAAGGTTGAGTGCTGAACATTACCTCTTTATCTGGTGCTCTGAATGGAACAGCTCGTGTCTACCTGGATGGAATGCACATTGTAGGCCAGAAGATGGAAAGGCAATCAAACCCATCTCTCTGTTACAGCTGTGTCACCATACCTTCAAGTCTGTTTGGAATTCAACCTCCTCTTTATTAGGACGCTGCAAATGAGCCAGTGGTGCTATCCCAGCACGCAGCAATGTGCCACTTCCTTACAAAGTGACGAGGATTGGCAAGAAAATGATGGACCATTAAACACAATCTCGATGCTTTAGCCCTGCTTTCCTGAGCCCCATTCCAGCTGCTGGCTAAGTCCAGAATTTTAGGATGGTCACTCGTTGCAACCAGGTGTTTGGTAAGACCGGAAAATAACTTGTCTCAAGCTTTGAGAAAGACCTAATTACGGTTTCTAATTTATGAGATTGATTGGTATTATACAATTGTGGAAGCTGATCACATTCTTTTCGTTATCAACCGAGAAAGGGCTGCGTACAATTCGAAAGCAGACCGAGTCCATGAGTACTGTTCCTTCCGTTCACCAGACAATGGATCATATATGCACTAACGTGGAGAATTGTATATGCCACTTATCTAGATTTAATCAAAGAAGCAGTGAAATCTGGTCATCTTGTATTTCAAAGAAGATTGAAGTTCATAAGATGTGATGGGAAATATTCTTGTGGCATTTCTTGCGACATGGGTGACCCTGCAATTTCTTTTGGTGGTTTCAACAAGAATTGACTACATGGTTAGGGTTGCAATTTTGTTGGTTGTTTCAACAAGAAAAAATACTACATGGTTGGGCTATTTCATGTAAATAAAACTTCAATTTGAAATAACTTGTTTTGGTGCACGCAATGTTAAATATGGGTATGTAAGTAAAGTTTG

Ace file of the UniGene sp_v2.0_unigene23130

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] ref\|NP_001184955.1\| alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] ref\|NP_001184956.1\| alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] gb\|AA	-	-	7.0e-25	69%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	70%
Blast2go	alpha beta-hydrolase domain-containing protein	-	-	4.51218e-34	79%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: D8RU83

Fln msg: Separated hits, possible frame ERROR between 610 and 1206, Unexpected STOP codon in 5 prime region,

Fln protein: HFVEILNNHRLKRFRALRAVAENYNKPKIVVSEGSGDIGNGPYLEGNELVPIVLVHGIFGFGKGKLGVVSYWAGAEKKDDGVLVPDLGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLFIRTLQMSQWCYPSTQQCATSLQSDEDWQENDGPLNTISML*PCFPEPHSSCWLSPEF*DGHSLQPGVW*DRKITCLKL*ERPNYGF*FMRLIGIIQLWKLITFFSLSTEKGLRTIRKQTESMSTVPSVHQTMDHICTNVENCICHLSRFNQRSSEIWSSCISKKIEVHKM*

Protein Length: 463

Fln nts: GTCCAGACCTACAGGGTTTACTTGCATTGTTCCACTGATAACTTCTCTGGCAGCAAGCCGCGGCCAGAATGGATTTCTCGATACCCATATGAATTTTCATGACACAAATGAATTTTCTCGGCAGCCAATTCCATTTTCACCAGCTGCAGATTCGCTTTCGTGTCCAAAAGTGACACGGTAGGTTCCGGGTTCGAGTACATCGGTGGTACTTTTCGGGTTTCTGAAGATGCATGCGGTTATGGGCAGTGACGTTGCTGGTCCTGTGCTTGGCAGAACTCTTGACCAGCGCTGCGGCTCATTTGGCTTCAGGGCATTATTTATTCAGCATTGCAGTGGCGTTTGACATTTTGTTGAAATTCTGAATAATCATCGTCTGAAGAGGTTTAGGGCATTGCGGGCAGTGGCAGAGAATTACAACAAACCAAAGATTGTGGTCTCTGAAGGGAGTGGAGATATAGGAAATGGACCTTATCTTGAGGGCAATGAACTGGTTCCAATTGTGCTGGTTCATGGGATTTTTGGCTTCGGAAAAGGGAAACTGGGTGTGGTGTCGTACTGGGCGGGGGCTGAAAAGAAGGACGACGGTGTGCTTGTTCCTGATTTGGGTTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCTCCTCTTTATTAGGACGCTGCAAATGAGCCAGTGGTGCTATCCCAGCACGCAGCAATGTGCCACTTCCTTACAAAGTGACGAGGATTGGCAAGAAAATGATGGACCATTAAACACAATCTCGATGCTTTAGCCCTGCTTTCCTGAGCCCCATTCCAGCTGCTGGCTAAGTCCAGAATTTTAGGATGGTCACTCGTTGCAACCAGGTGTTTGGTAAGACCGGAAAATAACTTGTCTCAAGCTTTGAGAAAGACCTAATTACGGTTTCTAATTTATGAGATTGATTGGTATTATACAATTGTGGAAGCTGATCACATTCTTTTCGTTATCAACCGAGAAAGGGCTGCGTACAATTCGAAAGCAGACCGAGTCCATGAGTACTGTTCCTTCCGTTCACCAGACAATGGATCATATATGCACTAACGTGGAGAATTGTATATGCCACTTATCTAGATTTAATCAAAGAAGCAGTGAAATCTGGTCATCTTGTATTTCAAAGAAGATTGAAGTTCATAAGATGTGA___TGGGAAATATTCTTGTGGCATTTCTTGCGACATGGGTGACCCTGCAATTTCTTTTGGTGGTTTCAACAAGAATTGACTACATGGTTAGGGTTGCAATTTTGTTGGTTGTTTCAACAAGAAAAAATACTACATGGTTGGGCTATTTCATGTAAATAAAACTTCAATTTGAAATAACTTGTTTTGGTGCACGCAATGTTAAATATGGGTATGTAAGTAAAGTTTG

Fln Alignment:

Contig23130___EGSGDIGNGPYLEGNELVPIVLVHGIFGFGKGKLGVVSYWAGAEKKDDGVLVPDLGSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLFIRTLQMSQWCYPSTQQCATSLQSDEDWQENDGPLNTISML*PCFPEPHSSCWLSPEF*DGHSLQPGVW
D8RU83_______________ESSATTHHGTFLDGHEKAPIVLVHGIFGFGKGKLGNISYWAGAEEKDERVLVPDLGSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLMIRSLQISCWKHPLPDIPYEGYR-DEDWQDNDGALNTISMLYPRFPYSHKNCPLAPDFKDGQALQPGVW

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
211	33			66	0.997452
213			33	66	0.997452
214		66	33		0.997452
330	20		80		0.995493
333			80	20	0.995493
408	80		20		0.995493
432		20		80	0.995493
457	85		14		0.993533
473		85		14	0.993533
516		16		83	0.994512
577	66		33		0.997452
629	33		66		0.997452
637	66		33		0.997452
674	66		33		0.997452
1469	83	16			0.994512
1470	16	66		16	0.988813
1471			66	33	1.0
1472		33	66		1.0
1473	33			50	1.0
1474			16	83	0.994512
1498	83			16	0.994512
1555		83	16		0.994512
1588	71		28		1.0
1666	18		81		0.999994
1726	25		75		1.0
1772		54		45	1.0
1782		60		40	1.0
1783	20			80	0.995493
1790			60	40	1.0
1801	40		60		1.0
1808		80		20	0.995493
1847	60	40			1.0
1900	75		25		0.996473
1903		25		75	0.996473
1905	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain