SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23127

Length: 2702 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene23127
CTTTTTCTTTTTAATGTCATGATGTGCTGCTGAAGAGAGCTGGGGTTTGGTTGATGTTGTGTGGGGTTTGTTTTGTGGCCTAGCGCGCCAGCGTTTCATGGCTTGCGCTTTTAGAGTTCTGGAAAGGTTAGGGTATCAGCGGAAGAATGATGACGAATCTAAGGTTTCATCCTTGGCTTGCAGTGTAGCAAGTAGATGTTGAGGGTGGAGTTTTCTGAATCCAGGCTTTCGCTGCTTTGTGTTTGATCATGTGCGAGAGTTATTTTCCCTGTTTGGGCTTCTTAAGAGGCCAGAGTGTGAAGGGTGCAGTTCTGAGGCCTAGTTTTGATATTTGAAAAGGCAGCGAGAAGGATATAGTTTTGAAATTTATTTTTTGACAAGGAGGTAGGAATAACAGGGTTTTTAGAATGGCAGCAATTGCTCTTTTGGCTAGAGTTGGCGTTGTTGTGCTTGTGCTACTTGGGCCATTGCCAGTAGATAGAGCCATTGGCGTTTCGGTCCCTCCGCCTGTCTCAGCTGGCGTTTCGGCCCCCACGTCTGTTCCAGAAGACGATATAAAATGCCTGCAAACTATAAAGAAGACCGTAAAAGACCCCCATGACTATCTTTATACTTGGAATTTCAATAATAATACGCCTGGGTTTATCTGTAACTTCCTAGGGATAGATTGTTGGCATCCAAACGAAAACAGGGTTTTGAACATCAAGCTTCCTGGGATGTCTCTTCAGGGCAGTTTTCCATCTGGCTTCGAGTATTGTGGAAGAATGACAGGTTTGGATCTCTCGGACAACAATCTATCCGGGACCATTCCTGTAAATCTTTCAAGATGGCTACGTTATCTGACTTCATTAGATCTCTCCCAGAACAATTTTAGTGGTTCAATTCCAGCAGAGCTTGCTAATTGCACATATTTGAATATAATTCATCTGCAGGAGAATCGGTTGTCTGGTGAAATTCCCTGGCAATTAACCCGGCTGGATCGTCTCAAGGATTTCAATGTACGAAGTAATCTATTGTCAGGGCCGATTCCTGCCTTTAACCACACGTTCGATGCATCTGATTTTGAGAATAATACTGCTCTTTGTGGTTCCCCACTGAAGCTCTGCAGTGACATGACTGCAAGGAAAACAGACCCACTTGTTATCGTAGGTGGATCGGTCTCTGGTGTTGCAGTCGTGTGTTTGATTGGAATTGCTGTCTGGTGGATTTTCTTGCGGTCAGTACCAAAAGAATTGGCGGATACAGATGAACACAAATGGGCCAAGCAGATAAAGAGTCGGCGATCCATTCAGGTTTCCATGTTTGAGAAACCCATTTCTAAGATCAGACTTGCTGATCTTATGGCGGCCACAAATGACTTTAGCAAAGACAACATCATAGGATCAGGAAGAACAGGCACTATGTATAAGGCAACACTGCAGGATGGTTCTTTACTGGCAATCAAAAGGTTGCAGTCTTCTGCACAGACAGAAAAGCAGTTCAAGTCTGAGATGAATATTCTAGGGCATTTGCAGCATCGGAATCTAGTTCCACTTCTTGGCTACTGTGTTGCCAAAAATGAGAAGCTTTTAGTTTACAGACACATGGCTAATGGATCATTGTATGAACGATTACATGATCATGAAATAGAGGATGGTAGTTATCTTGATTGGACTAGAAGGCTTAAGATAGGGATTGGTGCAGCTAGAGGTTTGGCCTGGCTCCACCACAGCTGCAACCCCCGAATTATTCACCGGAATGTAAGTTCAAACTGCATTTTATTGGATGAAAATGATGAGGCAAAGATAACAGATTTTGGGTTGGCTCGGTTGATGAATCCTGTCGATACTCATCTTAGTACTTTTATCAATGGTGATTTTGGCGACTTGGGTTATGTCGCACCAGAATACATGAGCACCTTGGTTGCTACATTGAAAGGGGATGTCTATAGTTTTGGAGTAGTACTTCTAGAGTTGGTTACCAGACAGAAACCTATTGAAGTTACAAATGTACAGGAAAGCTTTAAGGGAAATTTAGTTGAGTGGATCAGTCATCTTTCAAAAAATGGTCTCGTTCAAGAAGCCATTGACAAATCTTTAATTGGCAGAGGACAAGATGATGAGCTTCTCCAGGTTCTGAAGGTGGCTTGTGCTTGTGTTCTATCCCCTCATAAGGAGAGACCTTCCATGTATGAGGTTTACCACCTGCTAAGAGCAATTGGCGAAAGGTACAACTTTTCTGATCAGAATGAAGACATCCTTCTGGTATCAGGCATGGCTGATGCTGATTATTCAAATGAACTCATAGTGTCAACAGAACCATGAATTTCAAACTTGGATGTAACCATGAATATTTCTTGAGAAAAGCCTTTGCTCGTAATGACTGACAGCAAGAATCTACAGTCGTACCATTGTTGCAGAAGCAAGTGAGAGCTGCAAGCCAGATGAGGCTTAATGTAATGACAACTTTGTAGCAAGCGAGATGAGGCTTAATGTAATGACAACTTTGTAGTTTGTTAGGCCTCTTTGCAAACTACCTTTTATTGAGATTAAGTTTGAAGGTTTTATTGTGTACTATCATTAAAATTATTCTTGCAGTAGAATGATCGCTAGCTCCACCTCTGTCAACAAGCAAATGCAGAAAGAGTTGTAAGAAGTGCATTATAAAATCACGATTTAAATCACCACCTGCTGAGCCATTTGTGCATAACTCCAGGTAAGCAG

Ace file of the UniGene sp_v2.0_unigene23127 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative protein kinase [Oryza sativa Japonica Group] gb\|AAV32131.1\| putative systemin receptor SR160 [Oryza sativa Japonica Group] gb\|EEE63733.1\| hypothetical protein OsJ_18551 [Oryza sativa Japonica Group]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	probably inactive leucine-rich repeat receptor-like protein kinase at5g48380-like	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK76

Fln msg: your sequence is longer than subject: 632 - 564

Fln protein: MAAIALLARVGVVVLVLLGPLPVDRAIGVSVPPPVSAGVSAPTSVPEDDIKCLQTIKKTVKDPHDYLYTWNFNNNTPGFICNFLGIDCWHPNENRVLNIKLPGMSLQGSFPSGFEYCGRMTGLDLSDNNLSGTIPVNLSRWLRYLTSLDLSQNNFSGSIPAELANCTYLNIIHLQENRLSGEIPWQLTRLDRLKDFNVRSNLLSGPIPAFNHTFDASDFENNTALCGSPLKLCSDMTARKTDPLVIVGGSVSGVAVVCLIGIAVWWIFLRSVPKELADTDEHKWAKQIKSRRSIQVSMFEKPISKIRLADLMAATNDFSKDNIIGSGRTGTMYKATLQDGSLLAIKRLQSSAQTEKQFKSEMNILGHLQHRNLVPLLGYCVAKNEKLLVYRHMANGSLYERLHDHEIEDGSYLDWTRRLKIGIGAARGLAWLHHSCNPRIIHRNVSSNCILLDENDEAKITDFGLARLMNPVDTHLSTFINGDFGDLGYVAPEYMSTLVATLKGDVYSFGVVLLELVTRQKPIEVTNVQESFKGNLVEWISHLSKNGLVQEAIDKSLIGRGQDDELLQVLKVACACVLSPHKERPSMYEVYHLLRAIGERYNFSDQNEDILLVSGMADADYSNELIVSTEP*

Protein Length: 633

Fln nts: CTTTTTCTTTTTAATGTCATGATGTGCTGCTGAAGAGAGCTGGGGTTTGGTTGATGTTGTGTGGGGTTTGTTTTGTGGCCTAGCGCGCCAGCGTTTCATGGCTTGCGCTTTTAGAGTTCTGGAAAGGTTAGGGTATCAGCGGAAGAATGATGACGAATCTAAGGTTTCATCCTTGGCTTGCAGTGTAGCAAGTAGATGTTGAGGGTGGAGTTTTCTGAATCCAGGCTTTCGCTGCTTTGTGTTTGATCATGTGCGAGAGTTATTTTCCCTGTTTGGGCTTCTTAAGAGGCCAGAGTGTGAAGGGTGCAGTTCTGAGGCCTAGTTTTGATATTTGAAAAGGCAGCGAGAAGGATATAGTTTTGAAATTTATTTTTTGACAAGGAGGTAGGAATAACAGGGTTTTTAGA_-_ATGGCAGCAATTGCTCTTTTGGCTAGAGTTGGCGTTGTTGTGCTTGTGCTACTTGGGCCATTGCCAGTAGATAGAGCCATTGGCGTTTCGGTCCCTCCGCCTGTCTCAGCTGGCGTTTCGGCCCCCACGTCTGTTCCAGAAGACGATATAAAATGCCTGCAAACTATAAAGAAGACCGTAAAAGACCCCCATGACTATCTTTATACTTGGAATTTCAATAATAATACGCCTGGGTTTATCTGTAACTTCCTAGGGATAGATTGTTGGCATCCAAACGAAAACAGGGTTTTGAACATCAAGCTTCCTGGGATGTCTCTTCAGGGCAGTTTTCCATCTGGCTTCGAGTATTGTGGAAGAATGACAGGTTTGGATCTCTCGGACAACAATCTATCCGGGACCATTCCTGTAAATCTTTCAAGATGGCTACGTTATCTGACTTCATTAGATCTCTCCCAGAACAATTTTAGTGGTTCAATTCCAGCAGAGCTTGCTAATTGCACATATTTGAATATAATTCATCTGCAGGAGAATCGGTTGTCTGGTGAAATTCCCTGGCAATTAACCCGGCTGGATCGTCTCAAGGATTTCAATGTACGAAGTAATCTATTGTCAGGGCCGATTCCTGCCTTTAACCACACGTTCGATGCATCTGATTTTGAGAATAATACTGCTCTTTGTGGTTCCCCACTGAAGCTCTGCAGTGACATGACTGCAAGGAAAACAGACCCACTTGTTATCGTAGGTGGATCGGTCTCTGGTGTTGCAGTCGTGTGTTTGATTGGAATTGCTGTCTGGTGGATTTTCTTGCGGTCAGTACCAAAAGAATTGGCGGATACAGATGAACACAAATGGGCCAAGCAGATAAAGAGTCGGCGATCCATTCAGGTTTCCATGTTTGAGAAACCCATTTCTAAGATCAGACTTGCTGATCTTATGGCGGCCACAAATGACTTTAGCAAAGACAACATCATAGGATCAGGAAGAACAGGCACTATGTATAAGGCAACACTGCAGGATGGTTCTTTACTGGCAATCAAAAGGTTGCAGTCTTCTGCACAGACAGAAAAGCAGTTCAAGTCTGAGATGAATATTCTAGGGCATTTGCAGCATCGGAATCTAGTTCCACTTCTTGGCTACTGTGTTGCCAAAAATGAGAAGCTTTTAGTTTACAGACACATGGCTAATGGATCATTGTATGAACGATTACATGATCATGAAATAGAGGATGGTAGTTATCTTGATTGGACTAGAAGGCTTAAGATAGGGATTGGTGCAGCTAGAGGTTTGGCCTGGCTCCACCACAGCTGCAACCCCCGAATTATTCACCGGAATGTAAGTTCAAACTGCATTTTATTGGATGAAAATGATGAGGCAAAGATAACAGATTTTGGGTTGGCTCGGTTGATGAATCCTGTCGATACTCATCTTAGTACTTTTATCAATGGTGATTTTGGCGACTTGGGTTATGTCGCACCAGAATACATGAGCACCTTGGTTGCTACATTGAAAGGGGATGTCTATAGTTTTGGAGTAGTACTTCTAGAGTTGGTTACCAGACAGAAACCTATTGAAGTTACAAATGTACAGGAAAGCTTTAAGGGAAATTTAGTTGAGTGGATCAGTCATCTTTCAAAAAATGGTCTCGTTCAAGAAGCCATTGACAAATCTTTAATTGGCAGAGGACAAGATGATGAGCTTCTCCAGGTTCTGAAGGTGGCTTGTGCTTGTGTTCTATCCCCTCATAAGGAGAGACCTTCCATGTATGAGGTTTACCACCTGCTAAGAGCAATTGGCGAAAGGTACAACTTTTCTGATCAGAATGAAGACATCCTTCTGGTATCAGGCATGGCTGATGCTGATTATTCAAATGAACTCATAGTGTCAACAGAACCATGA___ATTTCAAACTTGGATGTAACCATGAATATTTCTTGAGAAAAGCCTTTGCTCGTAATGACTGACAGCAAGAATCTACAGTCGTACCATTGTTGCAGAAGCAAGTGAGAGCTGCAAGCCAGATGAGGCTTAATGTAATGACAACTTTGTAGCAAGCGAGATGAGGCTTAATGTAATGACAACTTTGTAGTTTGTTAGGCCTCTTTGCAAACTACCTTTTATTGAGATTAAGTTTGAAGGTTTTATTGTGTACTATCATTAAAATTATTCTTGCAGTAGAATGATCGCTAGCTCCACCTCTGTCAACAAGCAAATGCAGAAAGAGTTGTAAGAAGTGCATTATAAAATCACGATTTAAATCACCACCTGCTGAGCCATTTGTGCATAACTCCAGGTAAGCAG

Fln Alignment:

Contig23127___EDDIKCLQTIKKTVKDPHDYLYTWNFNNNTPGFICNFLGIDCWHPNENRVLNIKLPGMSLQGSFPSGFEYCGRMTGLDLSDNNLSGTIPVNLSRWLRYLTSLDLSQNNFSGSIPAELANCTYLNIIHLQENRLSGEIPWQLTRLDRLKDFNVRSNLLSGPIPAFNHTFDASDFENNTALCGSPLKLCSDMTARKTDPLXXXXXXXXXXXXVCLIGIAVWWIFLRSVPKELADTDEHKWAKQIKSRRSIQVSMFEKPISKIRLADLMAATNDFSKDNIIGSGRTGTMYKATLQDGSLLAIKRLQSSAQTEKQFKSEMNILGHLQHRNLVPLLGYCVAKNEKLLVYRHMANGSLYERLHDHEIEDGSYLDWTRRLKIGIGAARGLAWLHHSCNPRIIHRNVSSNCILLDENDEAKITDFGLARLMNPVDTHLSTFINGDFGDLGYVAPEYMSTLVATLKGDVYSFGVVLLELVTRQKPIEVTNVQESFKGNLVEWISHLSKNGLVQEAIDKSL
B8LK76_______________EDDIRCLQTIKRTVKDPHGYLYTWNFNNKTDGFICSFLGIDCWHPNENRVLNIKLPGMSLQGSFPTGFEYCGRMTGLDLSDNNLSGTIPVNLSKWLPYLTSLDLSQNNFHGSIPAEIANCTYLNIIHLQENQLSGEIPWQFSRLDRLKDFNVQSNRLSGPIPTFVNKIEASNFENNSALCGAPLKLCSDITSKKSNPLVIVGASVSGIAVVCVLGIAVWWIFLRSVPKQLADTDEHKWAKQIKGPRSIQVSMFEKRISKIRLVDLMAATNDFSKDNIIGSGRTGTMYKATLQDGSLLAIKRLSSSAQTEKQFKSEMNILGHLQHRNLVPLLGYCVAKNEKLLVYRHMANGSLYERLHDHEIEDGNYLDWTRRLKIGIGAARGLAWLHHSCNPRIIHRNVSSNCILLDENHEAKITDFGLARLMNPVDTHLSTFINGDFGDLGYVAPEYMSTLVATLKGDVYSFGVVLLELVTRQKPIEVTNVQESFKGNLVEWISHLSKNGLVLEAIEGGL

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
236	20		80		0.995493
242		12		87	0.992554
245		12	87		0.992554
307	12		87		0.992554
349	12		87		0.992554
444		90	10		0.90298
447		90		10	0.90298
448		90	10		0.90298
450		10		90	0.90298
454	10			90	0.90298
457			10	90	0.90298
458	90		10		0.90298
459		90		10	0.90298
464	90	10			0.90298
502		20	80		0.995493
1678		83		16	0.994512
1684		16		83	0.994512
1716		16		83	0.994512
1837			87	12	0.992554
1838			12	87	0.992554
1839	12			87	0.992554
1840		87	12		0.992554
1843	12		87		0.992554
1844		12	87		0.992554
1847	88	11			0.923564
1848	11		88		0.923564
1850			11	88	0.923564
1851		88	11		0.923564
1853	88	11			0.923564
1855		11		88	0.923564
1858	88	11			0.923564
1927		60		40	1.0
1971		54		45	1.0
2043	14	85			0.993533
2044		14		85	0.993533
2046			85	14	0.993533
2047			85	14	0.993533
2107	16		83		0.994512
2108		16	83		0.994512
2109	16		83		0.994512
2110			83	16	0.994512
2290			16	83	0.994512
2440	88	11			0.923564
2458		88	11		0.923564
2460	88	11			0.923564
2462		88	11		0.923564
2463	88	11			0.923564
2467	88		11		0.923564
2476	77	11			0.968132
2516		37		62	1.0
2662	66			33	1.0
2665	33			66	1.0
2666		66	33		1.0
2669			33	66	1.0
2670	33			66	1.0
2676		33	66		1.0
2677	33	66			1.0
2679		66	33		1.0
2680	66		33		1.0
2684		33		66	1.0
2688	66		33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain