SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23092

Length: 1294 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23092

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NDR1/HIN1-like 25 [Arabidopsis thaliana] gb\|AED94133.1\| NDR1/HIN1-like 25 [Arabidopsis thaliana]	-	-	9.0e-33	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	protein ndr1-like	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	0.0	62%
Blast2go	defense response, incompatible interaction	GO:0009814	Biological Process	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Enolpyruvate transferase domain	IPR001986	-	0.0	-
Sma3		IPR010847	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWB5

Fln msg:

Fln protein: MMADHQRIYPTTADVEKDAGEYVNEKPSAPLAPNSSNLSSEKGGVDPALVPPASNGRMRVKIPKDQVISRREHPRYLSPPPKRRCSCCRCLCCTICFLIAFVVIVAVACGVLYLVFRPKIPKYSVDSIHITNFTINPVDFSTNCQFAVNIKARNPNKRIGIYYLDNSHLAVLYSGSELCTGSLPVFYQGHKNTTLLDVELSGTGAKLTNAMETTLKAQINQASIPLELKADVPVKIKFGKLKLWKITVRARWDLTVDQLDAKATVTVKNSKVRVKL*

Protein Length: 278

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCCCATCATTGCGTGAAGGTCTTTAAGTTTCTGGGAGCCCCAGGATCGAGTCTCGTCGGCCTAAGTCGCTTCATTTTAAGTTTCCGGGAGTCCCAGGATCGAGTCTCGTCGGCCTAAGTCGGTTCATTTTAAGTTTCTGGGAGTCCCAGGATCGAATCTCGTCGGCCTAAGTCGGTTCATATCGCTTTGTTCGCAGCTCGGGGCCAGTTGCC_-_ATGATGGCAGATCACCAGAGAATCTACCCGACGACGGCAGATGTCGAGAAGGATGCAGGCGAATACGTAAACGAGAAGCCGAGCGCTCCATTGGCGCCCAATTCCAGCAATCTTTCGTCTGAAAAGGGCGGGGTCGATCCCGCGCTCGTTCCGCCTGCTTCAAACGGGCGGATGAGAGTTAAGATTCCAAAGGACCAAGTTATCTCCAGACGAGAGCATCCCAGATACCTGTCACCGCCTCCCAAGCGCCGGTGTTCCTGTTGCCGCTGCTTGTGCTGCACCATTTGCTTTTTAATCGCGTTCGTCGTGATCGTCGCCGTCGCCTGTGGCGTTCTGTACTTGGTCTTCAGGCCCAAGATCCCCAAATACTCTGTCGACAGCATCCATATTACTAATTTCACCATCAACCCCGTCGATTTCAGTACAAATTGCCAATTCGCTGTGAACATAAAGGCCCGGAATCCCAATAAGAGGATCGGTATATATTATCTCGACAACAGCCATCTCGCGGTTTTGTATTCAGGCTCGGAGCTCTGCACAGGCTCCCTGCCGGTATTCTACCAGGGCCACAAGAACACCACTTTGTTGGACGTGGAACTCAGCGGGACCGGTGCTAAGCTCACTAACGCCATGGAGACTACGCTCAAAGCGCAGATAAATCAGGCGAGCATTCCCCTGGAATTGAAGGCAGATGTTCCCGTGAAGATAAAGTTTGGGAAATTGAAGTTATGGAAGATAACAGTTCGCGCGCGATGGGACCTTACCGTCGACCAGCTCGATGCCAAGGCCACAGTTACTGTTAAGAATTCCAAGGTGCGGGTGAAGCTGTGA___GGATTGCGAGCGACTTCAGATGCAATAAATTCATCGTTAGGGCACGGTTAGGGTTAAATGTTTTTGTGATAGGACCATATAGATGCTACGGCTGCAGATAGACTTTTTCGATATACAATTTGTTTTGTTCAGACTCCATATACCACATTAATTGCCAACTTTCAGTTGGCAGATATACTGTTATTTTTAATAGCGTGGCCCTGTTTATATCGAGACATATTTTAG

Fln Alignment:

Contig23092___MADHQRIYPTTADVEKDAGEYVNEKPSAPLAPNSSNLSSEKGGVDPALVPPASNGRMRVKIPKDQVISRREHPRYXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXXXXXXXYLVFRPKIPKYSVDSIHITNFTINPVDFSTNCQFAVNIKARNPNKRIGIYYLDNSHLAVLYSGSELCTGSLPVFYQGHKNTTLLDVELSGTGAKLTNAMETTLKAQINQASIPLELKADVPVKIKFGKLKLWKITVRARWDLTVDQLDAKATVTVKNSKVRVKL
A9NWB5_______________MADNQRVHPTTEDVEKNAGEYENEKPSSPLVPKSS-AASEKDGVDPP-----SGRQMRVQFPRDQVIPTRQIPKYYSRPPKRRNSCCRCLCYAICFLFALVAIIAITCGILYLVFEPRIPKYSIDSVRITNFSIN-ADLSTNCQFAVNVSARNPNKKIGIYYLDNGHLAISYSGTELCTGALPVFYQGHKNTTFLDVVLRGTGARLTGAVVSTLKEQQQKASVPLNLKADVPVKIKLGKLKSMKIKVRVRWDLVVDRLDANAKVTTEKSKVSVML

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
57		66		33	1.0
88		66		33	1.0
143	87		12		0.992554
196	90	6	3		0.997544
197	90			9	1.0
201	6		90		0.997544
202	3	6	90		0.997544
204		6		93	0.999264
205	6	93			0.999264
230			90	9	1.0
335			21	78	1.0
501		11		88	0.999952
503		88		11	0.999952
668		15		84	0.999986
907			88	12	1.0
909	88		12		1.0
911			12	88	1.0
912	12	88			1.0
915		88		12	1.0
920	87	12			1.0
922			12	87	1.0
923			87	12	1.0
924	87	12			1.0
925	88	11			1.0
926		11	88		1.0
927			78	21	1.0
929	89			10	1.0
932		11		88	1.0
933		11	88		1.0
936		88	11		1.0
938		88		11	1.0
941		7	88		0.999079
944		3	88		0.999079
945	88	7		3	0.999079
1179		66		33	1.0
1216		41		58	1.0
1276		33		66	1.0
1277	66		33		1.0
1278		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain