SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23080

Length: 1166 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene23080 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable aquaporin n=2 Tax=Picea RepID=Q3ZDL5_PICAB	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	probable aquaporin	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	0.0	86%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Aquaporin	IPR012269	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9R4

Fln msg: Separated hits, possible frame ERROR between 379 and 451, your sequence is longer than subject: 303 - 272

Fln protein: MEKEARSGKVQYEEPPSAPLLDTNEFYLWSFYRAIIAEFVATLLFLYVTIATVIGNANDKSPCGGVGTLGIAWSCGGMIFVLVYCTAGISGDNxxxxxxxxxxxxxxxxxxxxxxxxxVAGGHLNPAVTFGLFVARKVTLNRAVLYMVAQCLGAICGAGMVKALQKTYYSSGGGGANSVSKGYGNETALTAEIVGTFVLVYTVFYATDIKSNVRDAHVPALAPLSIGFAVFMVHLATIPVTGTGINPARSFGAAVIYGHKKSWDDHWIFWVGPLIGATVAAAFHKYVIRASLKWRSKEANHV*

Protein Length: 304

Fln nts: ATGGGACTAAAGTTATGCGCCTGAGTTATCATTCTGATGATTTCCTCATCCACTGGTTGAGAACTGTGAGAAAGCCAGTAGTCTTCATTTTTGAAGT_-_ATGGAGAAGGAAGCACGATCGGGGAAGGTGCAGTATGAAGAGCCCCCTTCTGCTCCGCTTTTAGACACAAACGAATTCTATCTCTGGTCGTTCTACAGAGCCATCATAGCCGAGTTCGTGGCCACGCTTTTGTTTCTATATGTGACAATTGCCACCGTTATCGGGAATGCTAACGATAAGAGTCCGTGTGGAGGCGTGGGTACCCTGGGTATCGCCTGGTCCTGCGGCGGAATGATCTTTGTCCTCGTGTATTGCACCGCTGGAATTTCAGGTGATAATCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGTTGCAGGTGGGCATCTAAACCCCGCGGTCACGTTCGGGCTGTTTGTTGCTCGGAAAGTGACTCTGAATCGAGCAGTCTTGTACATGGTGGCACAGTGTTTGGGCGCAATCTGCGGGGCAGGGATGGTGAAAGCGTTGCAGAAAACTTACTATTCTAGTGGCGGGGGAGGAGCGAATTCAGTGTCGAAGGGATACGGCAATGAAACAGCTCTCACCGCAGAGATAGTTGGCACTTTTGTCTTGGTGTATACCGTCTTCTATGCCACCGACATCAAGAGCAACGTCCGCGACGCTCACGTTCCTGCTTTGGCTCCGCTTTCAATTGGATTTGCTGTATTCATGGTACACTTGGCAACCATTCCCGTCACTGGAACGGGCATCAATCCTGCCAGAAGCTTTGGAGCAGCTGTGATTTATGGCCATAAGAAATCCTGGGACGACCATTGGATCTTCTGGGTTGGTCCTCTTATTGGCGCTACGGTGGCTGCTGCGTTTCACAAATACGTTATCCGAGCATCCCTGAAATGGCGCAGCAAAGAAGCCAACCATGTTTAA___TGTAGAAACTGGACTTTGTTCACGCGGATGCATTTGTGTTGTAAAATTTGTGTTTGCTTTTAGATGTTTTGTAAGTTTTGAGGGGCCAATATTTCACGTACGCCGGATGTTAATCTCAAAATTGGCATCAATAGATGCTAAAATAAATTTGATACAACGGC

Fln Alignment:

Contig23080___MEKEARSGKVQYEEPPSAPLLDTNEFYLWSFYRAIIAEFVATLLFLYVTIATVIGNANDKSPCGGVGTLGIAWSCGGMIFVLVYCTAGISGDNLxxxxxxxxxxxxxxxxxxxxxxxxVAGGHLNPAVTFGLFVARKVTLNRAVLYMVAQCLGAICGAGMVKALQKTYYSSGGGGANSVSKGYGNETALTAEIVGTFVLVYTVFYATDIKSNVRDAHVPALAPLSIGFAVFMVHLATIPVTGTGINPARSFGAAVIYGHKKSWDDHWIFWVGPLIGATVAAAFHKYVIRASLKWRSKEANHV
D5A9R4_______________MVNEGRPQKAQYEDPPPAPFLDRNEFYLWSFYRAIIAEFVATLLFLYVTIATVIGNANQKKPCGGVGTLGIAWSFGGMIFVLVYCTAGVSGGHIxxxxxxxxxxxxxxxxxxxxxxxxVSGGHINPAVTFGLFVARKMTLNRAVFYIVAQCLGAVCGAGMVKALQKNYYSAGGGGANTVKEGYASETALAAEIAGTFVLVYTVFCATDPKSNARDSHVPALAPLSVGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKKSWNDHWIFWVGPLIGATIAAAFHKYVIRATLKPHSGEHNHV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
979		14	85		0.993533
1071		16		83	0.994512
1147	80		20		0.995493
1163		40		60	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain