SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene23012

Length: 625 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene23012

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative alanine aminotransferase [Arabidopsis thaliana]	-	-	1.4013e-45	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	alanine aminotransferase	-	-	0.0	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alanine transaminase.	EC:2.6.1.2	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	86%
Blast2go	Carbon fixation in photosynthetic organisms	00710	86%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	86%
Blast2go	Metabolic pathways	01100	86%

Source	GOs	Term	Type	Identity
Blast2go	response to hypoxia	GO:0001666	Biological Process	86%
Blast2go	L-alanine catabolic process, by transamination	GO:0019481	Biological Process	86%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	86%
Blast2go	copper ion binding	GO:0005507	Molecular Function	86%
Blast2go	L-alanine:2-oxoglutarate aminotransferase activity	GO:0004021	Molecular Function	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	-
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	-
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
167			16	83	0.999991
170		83	16		0.999991
256	82		17		1.0
470	87	12			0.992554
471	87		12		0.992554
475			12	87	0.992554
477			12	87	0.992554
478	12			87	0.992554
479		87	12		0.992554
480		87		12	0.992554
483		14	85		0.993533
487		14		85	0.993533
488	14		85		0.993533
495			14	85	0.993533
496		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain