SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22828

Length: 2316 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene22828
ATGGGGAGTGCAAGACTCCTAGTCAAATTCTGATATCTATGGGTCCCTTTTAGGTGAATTGGGTCTGTCTGTGTGATGGGGAGAGCGGCCCCTAAGGACTGGTTAGAAGCTTTTGGCCACTTCTGCATTGATTCGTCTGCATTGGAAGTCACTCAAATGTTCTACCGCCTCCATTAATTAATCCAGTCAGCACGGTCCATTTATCATTGGGAGGCTGGCTAGAGAAGACTTTGAGATTCTGAGGTCATAGAACAGCAAGAGGAGGTTCATCACATCTGGGGAGTGCCCATTTGCTTATTTGGACTGTTTTTCTGATTTTGGGACATGGGTTCATATTATTTAGTTCAGAGTCTGCTGGTTTGGTTCTGTTTGAGCCAGATTTGGAGGGAGTCAGCCTGTGTTTTGGAGGAGAATGGAGGTGATTTGGTGGTGGGTCTGAAGCACAGAGGCTTTGGAAACATGAAGGTCATGAATTCTTTTGAATTGCTTAGGGTTTCGAGCGAAAGAAGCTCTAGTAGGTTTCATTCTCTGAGAAGAAACAGACATGGGCATAAGAAGCATTCAATGGACTTCTCACTGCCTCTGAGAGCAGGGAGTGATTACATAATGCCATTAATGTTGGGCACCTCGCCGCAGAGACTGGAAGTGTTCATGGACACTGGAAGTGATCTTGTATGGGTCCCTTGCTCTGCAAACTCCTCAAAGCCTTCATTTGAATGCATCATGTGTGAGGATTTAGACATCCCCACATTCTCAGCATTTCAGTCTAATTCAAGCCGACCTGCGGTTTGTAGCTCTGATTCATGCTCTGCCATTCACAACTCAGATAACCCCAGAGATCTCTGCACCATGGCAGGCTGCTCATTTGAAAGTATTGACATGGATCCCTGTCAGGCCCCCTGCCCAGCATTTTATTATGCCTATGGGGATGGCAGCTTAAGGGGTGAGCTGATAAGAGACAGGCTATCAGTCCATCTAGCCAAAGGTGGTGCTAAAAAGATCACAAATTTCACATTTGGGTGTGCAGGAATTTCACTATCAGAGCCCATAGGAGTTGCAGGATTTGGCAGAGGAGTCCTGGCATTTCATGACCAATTAGGTGAAGTGGGAAACAAGGGCTTCTCCTACTGCCTTGTCAGCCATAGATTTGATGACAATCTCCATGTTTCCAGCCCTCTTCTGTTTGGAAAATCTGCAATCCCCAAACACGGTAAGGTCCACTACACACCAATGATGAATAATTTCAAGTATCCTTATTTCTACTACTTGGGTATTGAAGGAATCAGCATAGCGGGGCAGAAACTCGAACTCCCACCTAGTCTGACTAAATTTGACAAGGAAGGGAATGGTGGACTGATTATTGATTCCGGCACCACCTTCACCATGCTTCCAGCATCTCTGCACAGAAAGGTCTTAGACAAGCTCAAGTCCACAGTTAAGTACACCAGATCTGTTGATTATGAGACTGCCTCCGGGCTGGACCTCTGCTACGAGCTGCCCACTGCAGAAGGGTCTTCTCCTGTGTTGCCAACCTTCTCATTGCACTTCAAGAACAATGCTACAATCACACTTCCAGCTGAGAATTATATGTTTATGATGTCTGATCCTAGTGATGCTACCAGGACTAGTACTGGTACTGCTGCTGCAGCAGTGGGATGCCTGATCATTTTGAGCAGTGGAGATGAAGTGCATGGACCTGTTGCAGTTTTGGGTAACTATCAACAACAGAACCTTCATGTTGTCTATGATGTGGAGAAAGAAAGAGTTGGATTTCAACCAAAAACATGCAGTCCAACAACCAAATAATCTCAAATACAAAAGCTACTTTTTTCCAATTATATATCAGTAAAGCTCTGAGCTTCAATTGAACAACGGTCAGGAATCTTCAATGGCTAGGATAGGTACCTGGCTGGGGAGATCTTGGCAAGTTGTTTACACATTTTGAATCATTACAGTAACTGGACCTGTACAGAACAAATCTACTTTCTACTTTAATAGACTAAATTATATGCACAAACATACGGTCTTGTCAGCATAATTCTTCCATGGCAGACCATAATTTCTTGTTGTCCAACAACTGTCAATAACATGAAGTATGAAATCATAACACCATACAAGTGAGTGCAAGTGCAAGCATTCATTTCAGGAAAAAGTTGAAGTTGAGTTTCTTGGACAATCTATTTTCTAATCACTCCACCTTATCTATAGGAAGTCCATCACATTCATTCTGCTCTGCTACAAGTTTGTATAAGTCTGTATTCACTCTCCAGTTTATAAATTTCTGTTTATAAATATCAGATTATTATGGATGCTCAT

Ace file of the UniGene sp_v2.0_unigene22828 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aspartyl protease family protein [Arabidopsis thaliana] dbj\|BAB09497.1\| chloroplast nucleoid DNA-binding protein-like [Arabidopsis thaliana] gb\|AED95207.1\| aspartyl protease family protein [Arabidopsis thaliana]	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	aspartyl protease family protein	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase aspartic, catalytic	IPR009007	-	0.0	-
Sma3	Peptidase A1	IPR001461	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMJ0

Fln msg: your sequence is longer than subject: 494 - 242

Fln protein: MGSYYLVQSLLVWFCLSQIWRESACVLEENGGDLVVGLKHRGFGNMKVMNSFELLRVSSERSSSRFHSLRRNRHGHKKHSMDFSLPLRAGSDYIMPLMLGTSPQRLEVFMDTGSDLVWVPCSANSSKPSFECIMCEDLDIPTFSAFQSNSSRPAVCSSDSCSAIHNSDNPRDLCTMAGCSFESIDMDPCQAPCPAFYYAYGDGSLRGELIRDRLSVHLAKGGAKKITNFTFGCAGISLSEPIGVAGFGRGVLAFHDQLGEVGNKGFSYCLVSHRFDDNLHVSSPLLFGKSAIPKHGKVHYTPMMNNFKYPYFYYLGIEGISIAGQKLELPPSLTKFDKEGNGGLIIDSGTTFTMLPASLHRKVLDKLKSTVKYTRSVDYETASGLDLCYELPTAEGSSPVLPTFSLHFKNNATITLPAENYMFMMSDPSDATRTSTGTAAAAVGCLIILSSGDEVHGPVAVLGNYQQQNLHVVYDVEKERVGFQPKTCSPTTK*

Protein Length: 495

Fln nts: ATGGGGAGTGCAAGACTCCTAGTCAAATTCTGATATCTATGGGTCCCTTTTAGGTGAATTGGGTCTGTCTGTGTGATGGGGAGAGCGGCCCCTAAGGACTGGTTAGAAGCTTTTGGCCACTTCTGCATTGATTCGTCTGCATTGGAAGTCACTCAAATGTTCTACCGCCTCCATTAATTAATCCAGTCAGCACGGTCCATTTATCATTGGGAGGCTGGCTAGAGAAGACTTTGAGATTCTGAGGTCATAGAACAGCAAGAGGAGGTTCATCACATCTGGGGAGTGCCCATTTGCTTATTTGGACTGTTTTTCTGATTTTGGGAC_-_ATGGGTTCATATTATTTAGTTCAGAGTCTGCTGGTTTGGTTCTGTTTGAGCCAGATTTGGAGGGAGTCAGCCTGTGTTTTGGAGGAGAATGGAGGTGATTTGGTGGTGGGTCTGAAGCACAGAGGCTTTGGAAACATGAAGGTCATGAATTCTTTTGAATTGCTTAGGGTTTCGAGCGAAAGAAGCTCTAGTAGGTTTCATTCTCTGAGAAGAAACAGACATGGGCATAAGAAGCATTCAATGGACTTCTCACTGCCTCTGAGAGCAGGGAGTGATTACATAATGCCATTAATGTTGGGCACCTCGCCGCAGAGACTGGAAGTGTTCATGGACACTGGAAGTGATCTTGTATGGGTCCCTTGCTCTGCAAACTCCTCAAAGCCTTCATTTGAATGCATCATGTGTGAGGATTTAGACATCCCCACATTCTCAGCATTTCAGTCTAATTCAAGCCGACCTGCGGTTTGTAGCTCTGATTCATGCTCTGCCATTCACAACTCAGATAACCCCAGAGATCTCTGCACCATGGCAGGCTGCTCATTTGAAAGTATTGACATGGATCCCTGTCAGGCCCCCTGCCCAGCATTTTATTATGCCTATGGGGATGGCAGCTTAAGGGGTGAGCTGATAAGAGACAGGCTATCAGTCCATCTAGCCAAAGGTGGTGCTAAAAAGATCACAAATTTCACATTTGGGTGTGCAGGAATTTCACTATCAGAGCCCATAGGAGTTGCAGGATTTGGCAGAGGAGTCCTGGCATTTCATGACCAATTAGGTGAAGTGGGAAACAAGGGCTTCTCCTACTGCCTTGTCAGCCATAGATTTGATGACAATCTCCATGTTTCCAGCCCTCTTCTGTTTGGAAAATCTGCAATCCCCAAACACGGTAAGGTCCACTACACACCAATGATGAATAATTTCAAGTATCCTTATTTCTACTACTTGGGTATTGAAGGAATCAGCATAGCGGGGCAGAAACTCGAACTCCCACCTAGTCTGACTAAATTTGACAAGGAAGGGAATGGTGGACTGATTATTGATTCCGGCACCACCTTCACCATGCTTCCAGCATCTCTGCACAGAAAGGTCTTAGACAAGCTCAAGTCCACAGTTAAGTACACCAGATCTGTTGATTATGAGACTGCCTCCGGGCTGGACCTCTGCTACGAGCTGCCCACTGCAGAAGGGTCTTCTCCTGTGTTGCCAACCTTCTCATTGCACTTCAAGAACAATGCTACAATCACACTTCCAGCTGAGAATTATATGTTTATGATGTCTGATCCTAGTGATGCTACCAGGACTAGTACTGGTACTGCTGCTGCAGCAGTGGGATGCCTGATCATTTTGAGCAGTGGAGATGAAGTGCATGGACCTGTTGCAGTTTTGGGTAACTATCAACAACAGAACCTTCATGTTGTCTATGATGTGGAGAAAGAAAGAGTTGGATTTCAACCAAAAACATGCAGTCCAACAACCAAATAA___TCTCAAATACAAAAGCTACTTTTTTCCAATTATATATCAGTAAAGCTCTGAGCTTCAATTGAACAACGGTCAGGAATCTTCAATGGCTAGGATAGGTACCTGGCTGGGGAGATCTTGGCAAGTTGTTTACACATTTTGAATCATTACAGTAACTGGACCTGTACAGAACAAATCTACTTTCTACTTTAATAGACTAAATTATATGCACAAACATACGGTCTTGTCAGCATAATTCTTCCATGGCAGACCATAATTTCTTGTTGTCCAACAACTGTCAATAACATGAAGTATGAAATCATAACACCATACAAGTGAGTGCAAGTGCAAGCATTCATTTCAGGAAAAAGTTGAAGTTGAGTTTCTTGGACAATCTATTTTCTAATCACTCCACCTTATCTATAGGAAGTCCATCACATTCATTCTGCTCTGCTACAAGTTTGTATAAGTCTGTATTCACTCTCCAGTTTATAAATTTCTGTTTATAAATATCAGATTATTATGGATGCTCAT

Fln Alignment:

Contig22828___MGSYYLVQSLLVWFCLSQIWRESACVLEENGGDLVVGLKHRGFGNMKVMNXXXXXXXXXXXXXXXXXXXXXXXHGHKKHSMDFSLPLRAGSDYIMPLMLGTSPQRLEVFMDTGSDLVWVPCSANSSKPSFECIMCEDLDIPTFSAFQSNSSRPAVCSSDSCSAIHNSDNPRDLCTMAGCSFESIDMDPCQAPCPAFYYAYGDGSLRGELIRDRLSVHLAKGGAKK
B8LMJ0_______________MGSYNLVPSLLVWFCLSQIWRESACILEGNGGDLVVGLKHRGFENMKAMNSFELLRVSSKRSSSRFHSLRRNRHGHKKHSMDFSLPLRAGSDYIMPLMLGTSPQRLEVFMDTGSDLVWVPCSANSSKPSFECIMCEDLDIPTFSAFQSNSSRPAVCSSDSCSAIHNSDNPKDLCTMAGCPFESIDIDPCLAPCPAFYYAYGDGSLRAELMRDRLSVHLAKGGAKK

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
744	20		80		0.995493
850	42		57		1.0
1064			92	7	0.999602
1087		8		92	0.999718
1225	6		93		0.999364
1531		75		25	1.0
1537	25			75	1.0
1539	25		75		1.0
1542		25		75	1.0
1543	25			75	1.0
1544	25		75		1.0
1545	75		25		1.0
1546	75		25		1.0
1548		25		75	1.0
1886	91		8		1.0
2012	86		13		0.999973
2115	88	11			0.923564
2142	83	16			0.994512
2162			50	50	1.0
2163	50		50		1.0
2168		50	50		1.0
2171	50			50	1.0
2172			50	50	1.0
2173	50	50			1.0
2174	50	50			1.0
2177			50	50	1.0
2185	50	50			1.0
2186	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain