SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22789

Length: 866 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene22789 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alternative splicing regulator [Triticum aestivum]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	arginine serine-rich splicing	-	-	91%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Viral capsid, core, Hepatitis B virus	IPR002006	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR013084	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYX0

Fln msg: Separated hits, possible frame ERROR between 224 and 461, Unexpected STOP codon at 3' end. Distance to subject end: 147 aas, your sequence is shorter than subject: 247 - 316

Fln protein: MPRYDDRSGNTRLYVGRLSSRTRTRDLEDLFNRYGRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRFRRVRDVDLKHDFAFIEFSDPRDADEARYYLNGRDLDGSRIVVEFARGGPRGAGRTREYLGRGPPPGSGRCFNCGNDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKSTRCVLLLLAHVCEVATS*

Protein Length: 248

Fln nts: TTAGTTTGGTAGAATTCTTCTGGCCAGTTTCTACATTTTCCTGGTTTTGGATTTTCAAAACATGTTATGGATGTTTTCAGAAGCTACTGTTTTTCCTGTTGTAGTGATTAAAA_-_ATGCCCCGCTATGATGATCGTTCTGGAAACACACGGCTCTATGTTGGCCGACTGTCTTCTCGTACCCGTACACGTGATCTTGAGGATCTTTTCAACAGATATGGAAGGTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACGTTTCCGCAGAGTCCGTGATGTGGATTTGAAGCACGACTTCGCCTTTATTGAATTTAGTGATCCTCGTGATGCGGATGAAGCAAGATACTATCTTAATGGAAGAGATCTGGATGGGAGTCGCATTGTTGTGGAATTTGCAAGAGGGGGACCACGAGGAGCTGGTCGAACTAGAGAATATCTAGGAAGGGGCCCTCCCCCTGGGTCTGGGCGGTGCTTCAATTGTGGGAATGATGGCCATTGGGCTCGAGACTGTAAAGCAGGGGATTGGAAAAACAAATGTTATCGTTGTGGTGAGCGTGGTCATATTGAAAGAAACTGTCAAAACAGTCCAAAATCAACCAGGTGTGTTTTATTACTTTTGGCCCATGTTTGTGAAGTAGCAACTTCCTGAAAGCTAACAAAAA

Fln Alignment:

Contig22789___MPRYDDRSGNTRLYVGRLSSRTRTRDLEDLFNRYGRLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRFRRVRDVDLKHDFAFIEFSDPRDADEARYYLNGRDLDGSRIVVEFXXXXXXXXXXXR--EYLGRGPPPGSGRCFNCGNDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKSTR
A9NYX0_______________MPRYDDRSGNTRLYVGRLSSRTRTRDLEDLFNRYGRVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRYGRVRDVDLKHDFAFIEFSDPRDADEARYYLNGRDLDGSRIVVEFARGGPRGAAGGRTREYLGRGPPPGSGRCFNCGNDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKSTR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
452			85	14	0.993533
561		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain