SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22788

Length: 1454 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene22788

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-expansin 11, putative n=1 Tax=Ricinus communis RepID=B9R8E5_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	alpha-expansin 11	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Expansin	IPR002963	-	-
Sma3		IPR005132	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMF3

Fln msg:

Fln protein: MVMGIIKRQAASLVKGFVIALVFSISVAEGSAYTSSGWTSGHATFYGGSDASGTMGGACGYGDLYSAGYGTKTAALSTALFNSGATCGACFQIQCDISKDPQWCLPGPQSITITATNFCPPNYALPSNDGGWCNPPLMHFDMAQPAWEKIAIYSGGIVPVQFRRVPCTPVGGVRFTINGRSYFELVLLSNVGGAGDISAVSIKGSNTGWQPMSRNWGANWQSNSYLSGQSLSFQVTTSDGNSITFYNVAPSNWQFGQTFATSQQFN*

Protein Length: 268

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGACACGGCTTTGCATCCAAGCACTAGCGCCTGCAACTTTTCTGGGTTGAGAAAGCTGAGTAAACCCATTTGATACA_-_ATGGTCATGGGGATCATAAAGCGCCAGGCAGCTAGTCTTGTGAAGGGATTTGTTATTGCATTGGTTTTTAGTATATCAGTTGCAGAGGGCAGTGCGTATACTAGTTCTGGATGGACCAGCGGCCATGCTACATTCTATGGAGGCAGCGATGCCTCTGGCACCATGGGGGGCGCTTGTGGATATGGTGATCTATACAGCGCTGGCTATGGCACTAAAACTGCAGCTCTGAGCACCGCTCTGTTTAACAGTGGGGCCACTTGTGGGGCATGCTTCCAGATACAGTGTGATATAAGCAAGGATCCACAGTGGTGTTTGCCAGGGCCACAATCGATAACAATCACAGCGACAAATTTCTGCCCTCCTAATTACGCTCTTCCCAGCAATGATGGGGGTTGGTGTAATCCTCCCCTCATGCATTTCGACATGGCCCAACCTGCGTGGGAGAAGATCGCCATTTACAGCGGAGGGATTGTGCCCGTTCAATTCAGAAGAGTGCCGTGCACACCTGTTGGAGGTGTTCGATTCACCATTAATGGCCGTTCGTACTTCGAGCTTGTCCTGCTCTCGAATGTGGGCGGAGCAGGGGATATTAGCGCGGTGTCGATTAAGGGTTCGAACACTGGATGGCAACCCATGTCCAGGAACTGGGGAGCCAACTGGCAGAGCAACTCGTACCTCAGTGGGCAGAGCCTGTCCTTCCAAGTGACCACCAGTGATGGCAATTCCATTACCTTCTACAACGTTGCCCCTTCGAATTGGCAATTCGGACAGACTTTTGCAACCTCGCAGCAGTTCAATTGA___TTTCGCAATCCTATGTTTTATTTCACTATATTTCGTATTTGTTTTATGACCAGTACCAGAATTCTATATAAGTTATCCTAAATCAGTACCAAAACTTCTGAAAATAACTCTGAATACAGTCCGGGTGCTTGAATGGCGGCAGCAGAGGCGAGCTTGATCATGAATCTTCGTTGCAGCAGCCCGCTGTTCTACCTATAACAGTTGTCACCGCCTCAGCCAAAAGTCGGTGGCTGAACTATCAAACCGTGCAGACTGTAGCTTTGTATAATCTGGTTATGGACCTTGTCATCCTTCTGTAAAGAGTGCGATATATTCTATAGATAGATAAATATCCATGTTGCTGATATTCTTCTTCTCGGCTCTGTGAGCCGAACCGTGTCCCAATGCTCTGTAGATTCGTAAAGGGTACTGTCCATTTTTAAAGCTTGGATAATAAATGCATGGTTCAGTTGAAAATAGAGTGATGAATTTCGAGAATGCTATTCGGCCTTTCTCTGTCTATTGTAAATTTTGATTTTGCATTGATTGCAGTACTGTTGGAGTTTGGAAAG

Fln Alignment:

Contig22788___IALVFSISVAEGSAYT-SSGWTSGHATFYGGSDASGTMGGACGYGDLYSAGYGTKTAALSTALFNSGATCGACFQIQCDISKDPQWCLPGPQSITITATNFCPPNYALPSNDGGWCNPPLMHFDMAQPAWEKIAIYSGGIVPVQFRRVPCTPVGGVRFTINGRSYFELVLLSNVGGAGDISAVSIKGSNTGWQPMSRNWGANWQSNSYLSGQSLSFQVTTSDGNSITFYNVAPSNWQFGQTF
B8LMF3_______________LASVFCFWWIAGAAYALDSSWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLTCGACYEMKCNEETDPQWCLPG--TVTVTATNFCPPNNALPNDNGGWCNPPLQHFDMAQPAYQQIAIYRGGIVPIMFRRVPCVRKGGVRFTINGHSYFNLVLITNVGGAGDVEAVSIKGSNSGWQAMSRNWGQNWQSNSYLNGQTLSFQVTTSDGRTVTSYNVAPANWQFGQTF

SNPs (tot: 68)

Position	A %	C %	G %	T %	Probability
188	94	5			0.997984
197		58	38		1.0
270			93	6	0.999453
301	40		59		1.0
429	85	10			0.999793
430	90		10		0.999898
436	90		10		0.999898
439	83	11			0.999887
440	88			11	0.999937
442		88	11		0.999937
445	88			11	0.999952
447		88		11	0.999952
448		11	88		0.999952
451	88			11	0.999952
452	88	11			0.999952
501		10	84		0.999846
661		11		88	0.999937
665		88	11		0.999937
668	11	88			0.999937
669		11		88	0.999937
672		88		11	0.999937
674	88		11		0.999937
675	88	11			0.999937
679	10	5	73	5	0.999718
680		10	89		0.999919
681			84	15	1.0
815	86			13	0.999973
816		85		14	0.999981
820		14		85	0.999981
914	78	21			1.0
915	73		21	5	1.0
918		78		21	1.0
919			22	77	1.0
921		23		76	1.0
922		23	70		1.0
925			29	70	1.0
926		6	25	68	1.0
927	73	26			1.0
928		21		73	1.0
929			42	57	1.0
933		78	21		1.0
936		21		78	1.0
937	78			21	1.0
939			21	78	1.0
940			21	78	1.0
946	5	11		83	0.999887
947	11			88	0.999937
949		10		89	0.999919
1125		94	5		0.998397
1126	94			5	0.998397
1127	94	5			0.998397
1128	94		5		0.998397
1129	94			5	0.998397
1131	5			94	0.998397
1133		5	94		0.998397
1134			94	5	0.998397
1142	94			5	0.998397
1144	5			94	0.998397
1145	94	5			0.998397
1150	92		2	5	0.992495
1153			95	4	0.996599
1157	90			9	1.0
1159	90		2	6	0.999997
1161	4	2		93	0.983471
1162		4	93	2	0.983471
1164	90	4	2		0.938371
1165	4	2	93		0.983471
1291	92			7	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain