SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22759

Length: 770 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene22759 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chaperone n=7 Tax=Agave tequilana RepID=A4ZF46_AGATE	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	chaperone	-	-	86%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
259		9		90	0.999872
297		90		9	0.999872
411		8		91	0.999807
457	8	91			0.999807
467	88		11		0.999937
529		48		52	1.0
571	45	54			1.0
584	1	52		45	1.0
600	96		3		0.990463
614	44			56	1.0
637	93	6			0.999999
639		6	2	90	0.999997
640	51			48	1.0
641	2	89		5	0.979359
642		51		48	1.0
651	93	6			0.999264
652		6	93		0.999264
653		6	93		0.999264
655	93			6	0.999453
669		14	85		0.993533
670	85	14			0.993533
671		14	28		1.0
672		14		85	0.993533
673	16		83		0.994512
675	80			20	0.995493
676		60		40	1.0
678		20	40	40	1.0
679		60		40	1.0
680	40	60			1.0
682	80			20	0.995493
683	50		50		1.0
685	25			50	0.995533
686	25	50		25	0.995533
687	50			50	1.0
688		50	25	25	0.995533
690	50		50		1.0
691		50	25		0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain