SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22730

Length: 714 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene22730

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calmodulin 5 n=2 Tax=Arabidopsis RepID=F4IVN6_ARATH	-	-	82%
FL-Next	tr=Putative calmodulin; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	85%
Blast2go	calmodulin	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	O-methyltransferase, family 3	IPR002935	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
36		80	20		0.999996
51		20		80	0.999996
123		71		28	1.0
378			87	12	0.992554
379	87			12	0.992554
380	87			12	0.992554
381	87	12			0.992554
382	87		12		0.992554
383	85	14			0.993533
406		14	85		0.993533
408	85			14	0.993533
409	85	14			0.993533
410			16	83	0.994512
414	83	16			0.994512
415		16	83		0.994512
416			83	16	0.994512
417	83			16	0.994512
422			25	75	0.996473
424		25		75	0.996473
425	75	25			0.996473
426	50		25	25	0.995533
427	50	50			1.0
428	33		66		0.997452
463			25	75	0.996473
469		25	75		0.996473
475	75		25		0.996473
574			80	20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain