SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22694

Length: 2105 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene22694
CGTCGTGACCTTGGCTGTCACTCATTTTCATTCTTTTTAAAGAATTCTTTGGGCTGAAAATTCCTGATTCTGGGCGGCCTTGTTCCATTGGTATTCGAGTACCCAATTTGGGTGCCAGCCTAATTTCTTCCTATAACAGGCATTGAAGCTCTATTGAGTTTGCGTCCAGTACCATTTTCAATTTGGGTCTTGTTGTATTGAGAAGGAGAAAGGGGCGGGTCCAGTATGGCCACATTTAAAGAACAAAGTTGTGAAGCCGATGTTTGTGCTTCTGGTCGAGAGCTATGCTCTACTCCTCCCTCTTCTCCTCCCTCAGTAATTGTAATAGGTGGTGGATTTGCTGGGCTGGCAGCTGCTAATGCTCTTCACAATGCATGTTTCAAGGTGATTTTGTTGGAATCAAGGGATAGAATTGGAGGCCGTGTATACACAGATTATTCTTTTGGTTTTCCCATTGACATGGGTGCTTCATGGCTACATGGTGTTTGTAAGGAAAACCCTTTGGCACCTGTGATTGGGAAATTGGGACTTCCATTGTACCGCACCAGTGGTGATAATTCTGTATTGTATGATCATGATTTGGAGAGCTACGCTCTTTTTGACATGGATGGGCAACAAGTTCCACCAGAAATGGTGACTAAAGTTGGAGAGGCATTTGAAGTCCTTATAGAAGAGACTAAGAAAGTACGAGATGAAATCGAAGAAGATATGTCAGTGCAGGAAGCTTTTTCCATTGTATTGGAAAGACATCCTGATTTAAGGCAACATGGGCTTTCGCAGAAAGTTTTGCAATGGTACTTGTGTAGAATGGAAGGTTGGTTTGCTGCAGATACAGATATAATATCTTTAAAAAGCTGGGATCAGGAAGAGCTGCTTGAAGGTGGGCATGGGCTCATGGTGAGAGGTTATTATCCTGTTATAGAGGCTCTTGCTGAAGGCGTTGATATACGTCTGAGTCACAGAGTTACAAAAGTATCTCGGCGATCTAGTGGGGTAAGAGTTACTGTGGAGGACGGAAGAACATTTATAGCAGATGCAGCTATTGTTACTGTACCTCTTGGTATTTTGAAAGCAAACACGATACAATTTGACCCACGGTTGCCAGAGTGGAAAGAGGCCGCCATTTCAGATCTAGGAGTTGGCAATGAGAACAAAATTGCTTTATATTTTGAAAATGTGTGCTGGCCAAATGTGGACTTTTTAGGAGTGGTTGCTCCTACTTCTTATGGTTGTAGCTACTTCTTGAATCTGCACAAAGCAACTGGTCATGCTGTTCTTGTATACATGCCTTCGGGAAGACTAGCTAATGATATAGAAAAGATGTCCGATGAAGCAGCTTCTAGCTTTGCAGTTTTGCAGCTAAAGACAATTCTGCCTCATGCATCTGAACCAATCAAATGTCTTGTGTCACGGTGGGGAATGGACTCCAATTCTCTTGGTTGTTACTCCTATGATATTGTTGGTAAGCCTCACGATGTGTATGAGCGGCTACGGATTCGTGTCGACACTCTCTTTTTTGCAGGGGAGGCTACAAGTACACTTTATCCAGGTACAGTGCATGGGGCTTTCGCTACGGGAAGAGAGGCCGCCGACGAGTGCAGGAGACATTTTCTGGAGCAATATAGTGATTTGGAGTTATTTCAGCCTGTGATGGCAGAGGGGCTCACAAATGTGTCAGCACCCCTGCAAATATCAAGACTCTAGTCAGGAATTCAGAGTCCCAATATTTAGATTCACAGTTAAGTAATGGATTTGTCTGCAATGAAAGGGATGCATAGACATTGTATAATAGTGAACTTCAGAAAGAATTGAAGTTTGTTACAACTTGCAGGTGTTTGCAATGGCTAAGCCCTCAGCATGTGCCCCAGTGTAAGCTGGTGCATATAGACTTGTATGCTGTGAAACTGAAAATTCTTTGTGATATATGGTTCAGTTGTGAAATTTATCAGTTTGACAGCCATAGGAGATACTGATTGTATGGTCTTCAAGCTGATTTTTTTTCGAATTTTTTAAACGAAGAGTGCAAATCGAATGTGATTCATTCATTTCCGAGGACAATATATGAGATTTTTTAACATTGTAAGGTCAAACTTGTAACAATCACG

Ace file of the UniGene sp_v2.0_unigene22694

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative polyamine oxidase 2 [Arabidopsis thaliana] sp\|Q9SKX5.1\|PAO2_ARATH RecName: Full=Probable polyamine oxidase 2; Short=AtPAO2; AltName: Full=Amine oxidase 1 gb\|AAO85404.1\|AF364952_1 putative amine oxidase 1 [Arabidopsis thaliana] gb\|AAD22129.1\| puta	-	-	69%
FL-Next	sp=Probable polyamine oxidase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	protein	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Flavin amine oxidase	IPR001613	-	0.0	-
Sma3	Amine oxidase	IPR002937	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SKX5

Fln msg:

Fln protein: MATFKEQSCEADVCASGRELCSTPPSSPPSVIVIGGGFAGLAAANALHNACFKVILLESRDRIGGRVYTDYSFGFPIDMGASWLHGVCKENPLAPVIGKLGLPLYRTSGDNSVLYDHDLESYALFDMDGQQVPPEMVTKVGEAFEVLIEETKKVRDEIEEDMSVQEAFSIVLERHPDLRQHGLSQKVLQWYLCRMEGWFAADTDIISLKSWDQEELLEGGHGLMVRGYYPVIEALAEGVDIRLSHRVTKVSRRSSGVRVTVEDGRTFIADAAIVTVPLGILKANTIQFDPRLPEWKEAAISDLGVGNENKIALYFENVCWPNVDFLGVVAPTSYGCSYFLNLHKATGHAVLVYMPSGRLANDIEKMSDEAASSFAVLQLKTILPHASEPIKCLVSRWGMDSNSLGCYSYDIVGKPHDVYERLRIRVDTLFFAGEATSTLYPGTVHGAFATGREAADECRRHFLEQYSDLELFQPVMAEGLTNVSAPLQISRL*

Protein Length: 494

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCATTCTTTTTAAAGAATTCTTTGGGCTGAAAATTCCTGATTCTGGGCGGCCTTGTTCCATTGGTATTCGAGTACCCAATTTGGGTGCCAGCCTAATTTCTTCCTATAACAGGCATTGAAGCTCTATTGAGTTTGCGTCCAGTACCATTTTCAATTTGGGTCTTGTTGTATTGAGAAGGAGAAAGGGGCGGGTCCAGT_-_ATGGCCACATTTAAAGAACAAAGTTGTGAAGCCGATGTTTGTGCTTCTGGTCGAGAGCTATGCTCTACTCCTCCCTCTTCTCCTCCCTCAGTAATTGTAATAGGTGGTGGATTTGCTGGGCTGGCAGCTGCTAATGCTCTTCACAATGCATGTTTCAAGGTGATTTTGTTGGAATCAAGGGATAGAATTGGAGGCCGTGTATACACAGATTATTCTTTTGGTTTTCCCATTGACATGGGTGCTTCATGGCTACATGGTGTTTGTAAGGAAAACCCTTTGGCACCTGTGATTGGGAAATTGGGACTTCCATTGTACCGCACCAGTGGTGATAATTCTGTATTGTATGATCATGATTTGGAGAGCTACGCTCTTTTTGACATGGATGGGCAACAAGTTCCACCAGAAATGGTGACTAAAGTTGGAGAGGCATTTGAAGTCCTTATAGAAGAGACTAAGAAAGTACGAGATGAAATCGAAGAAGATATGTCAGTGCAGGAAGCTTTTTCCATTGTATTGGAAAGACATCCTGATTTAAGGCAACATGGGCTTTCGCAGAAAGTTTTGCAATGGTACTTGTGTAGAATGGAAGGTTGGTTTGCTGCAGATACAGATATAATATCTTTAAAAAGCTGGGATCAGGAAGAGCTGCTTGAAGGTGGGCATGGGCTCATGGTGAGAGGTTATTATCCTGTTATAGAGGCTCTTGCTGAAGGCGTTGATATACGTCTGAGTCACAGAGTTACAAAAGTATCTCGGCGATCTAGTGGGGTAAGAGTTACTGTGGAGGACGGAAGAACATTTATAGCAGATGCAGCTATTGTTACTGTACCTCTTGGTATTTTGAAAGCAAACACGATACAATTTGACCCACGGTTGCCAGAGTGGAAAGAGGCCGCCATTTCAGATCTAGGAGTTGGCAATGAGAACAAAATTGCTTTATATTTTGAAAATGTGTGCTGGCCAAATGTGGACTTTTTAGGAGTGGTTGCTCCTACTTCTTATGGTTGTAGCTACTTCTTGAATCTGCACAAAGCAACTGGTCATGCTGTTCTTGTATACATGCCTTCGGGAAGACTAGCTAATGATATAGAAAAGATGTCCGATGAAGCAGCTTCTAGCTTTGCAGTTTTGCAGCTAAAGACAATTCTGCCTCATGCATCTGAACCAATCAAATGTCTTGTGTCACGGTGGGGAATGGACTCCAATTCTCTTGGTTGTTACTCCTATGATATTGTTGGTAAGCCTCACGATGTGTATGAGCGGCTACGGATTCGTGTCGACACTCTCTTTTTTGCAGGGGAGGCTACAAGTACACTTTATCCAGGTACAGTGCATGGGGCTTTCGCTACGGGAAGAGAGGCCGCCGACGAGTGCAGGAGACATTTTCTGGAGCAATATAGTGATTTGGAGTTATTTCAGCCTGTGATGGCAGAGGGGCTCACAAATGTGTCAGCACCCCTGCAAATATCAAGACTCTAG___TCAGGAATTCAGAGTCCCAATATTTAGATTCACAGTTAAGTAATGGATTTGTCTGCAATGAAAGGGATGCATAGACATTGTATAATAGTGAACTTCAGAAAGAATTGAAGTTTGTTACAACTTGCAGGTGTTTGCAATGGCTAAGCCCTCAGCATGTGCCCCAGTGTAAGCTGGTGCATATAGACTTGTATGCTGTGAAACTGAAAATTCTTTGTGATATATGGTTCAGTTGTGAAATTTATCAGTTTGACAGCCATAGGAGATACTGATTGTATGGTCTTCAAGCTGATTTTTTTTCGAATTTTTTAAACGAAGAGTGCAAATCGAATGTGATTCATTCATTTCCGAGGACAATATATGAGATTTTTTAACATTGTAAGGTCAAACTTGTAACAATCACG

Fln Alignment:

Contig22694___FKVILLESRDRIGGRVYTDYSFGFPIDMGASWLHGVCKENPLAPVIGKLGLPLYRTSGDNSVLYDHDLESYALFDMDGQQVPPEMVTKVGEAFEVLIEETKKVRDEIEEDMSVQEAFSIVLERHPDLRQHGLSQKVLQWYLCRMEGWFAADTDIISLKSWDQEELLEGGHGLMVRGYYPVIEALAEGVDIRLSHXXXXXXXXXXXXXXXXEDGRTFIADAAIVTVPLGILKANTIQFDPRLPEWKEAAISDLGVGNENKIALYFENVCWPNVDFLGVVAPTSYGCSYFLNLHKATGHAVLVYMPSGRLANDIEKMSDEAASSFAVLQLKTILPHASEPIKCLVSRWGMDSNSLGCYSYDIVGKPHDVYERLRIRVDTLFFAGEATSTLYPGTVHGAFATGREAADECRRHFLEQYSDLELFQPVMAEGLTNVSAPLQISRL
Q9SKX5_______________FQVMVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAPVIGRLGLPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTQIGVTFERILEEINKVRDEQDADISISQAFSIVFSRKPELRLEGLAHNVLQWYVCRMEGWFAADAETISAKCWDQEELLPGGHGLMVRGYRPVINTLAKGLDIRVGHRVTKIVRRYNGVKVTTENGQTFVADAAVIAVPLGVLKSGTIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFWPKVEFLGVVAETSYGCSYFLNLHKATGHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILPDALPPVQYLVSRWGSDVNSMGSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVLERYGELDLFQPVMGEE-GPASVPLLISRL

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
454	75	25			1.0
455			12	87	0.992554
458	87		12		0.992554
460	75		12	12	0.975346
462		12	87		0.992554
463	12		87		0.992554
464		25	75		1.0
466		12	87		0.992554
467	12	87			0.992554
468		12		87	0.992554
934	35		64		1.0
1119	18	81			0.999994
1269		16		83	0.999991
1627		8	92		0.999718
1863		93		6	0.999264
1947		93		6	0.99903
1970	37	62			1.0
1983		72		27	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain