SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22649

Length: 1020 nt

Origin of reads: Inia v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene22649

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	adrenodoxin-like protein [Arabidopsis thaliana] emb\|CAB79109.1\| adrenodoxin-like protein [Arabidopsis thaliana] dbj\|BAB79227.1\| MFDX2 [Arabidopsis thaliana]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	ferredoxin 2	-	-	86%

Source	InterPros	Term	Type	Identity
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	Adrenodoxin	IPR001055	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	Adrenodoxin, iron-sulphur binding site	IPR018298	-	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
107		66		33	0.997452
110	33		66		0.997452
112		66		33	0.997452
115		33		66	0.997452
116	33		66		0.997452
120	33		66		0.997452
121	33			66	0.997452
129		66		33	0.997452
130	66		33		0.997452
294	70		30		1.0
296	87	12			0.999964
298		87		12	0.999964
300	87		12		0.999964
301	87			12	0.999964
302		87	12		0.999964
304		12	87		0.999964
305	87	12			0.999964
307			87	12	0.999964
308	87		12		0.999964
309	87		12		0.999964
310		12	87		0.999964
311	87			12	0.999964
313	87			12	0.999964
316			87	12	0.999964
812	14	85			0.993533
855	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain