SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22584

Length: 619 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene22584 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S30 [Arabidopsis thaliana] ref\|NP_200478.1\| 40S ribosomal protein S30 [Arabidopsis thaliana] ref\|NP_565458.1\| 40S ribosomal protein S30 [Arabidopsis thaliana] ref\|XP_002866160.1\| 40S ribosomal protein S30 [Arabidopsis lyrata subsp. l	-	-	5.0e-19	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	40s ribosomal protein s30	-	-	4.72981e-27	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	4.72981e-27	95%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	4.72981e-27	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S30	IPR006846	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
229	75		25		0.996473
245	25		75		0.996473
331		33		66	1.0
446	33		66		1.0
462	33		66		1.0
497	33	66			1.0
510	33		66		1.0
513	33		66		1.0
551		20	80		0.995493
552		20		80	0.995493
553	80	20			0.995493
554		20	80		0.995493
556	80			20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
337	348	CTT CTT CTT CTT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain