SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22481

Length: 807 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene22481

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ferredoxin-1, chloroplastic n=1 Tax=Mesembryanthemum crystallinum RepID=FER1_MESCR	-	-	8.0e-31	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	chloroplast ferredoxin i	-	-	0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	photosynthetic electron transport chain	GO:0009767	Biological Process	65%
Blast2go	response to light stimulus	GO:0009416	Biological Process	65%
Blast2go	protein binding	GO:0005515	Molecular Function	65%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	65%
Blast2go	response to karrikin	GO:0080167	Biological Process	65%

Source	InterPros	Term	Type	Identity
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Ferredoxin [2Fe-2S], plant	IPR010241	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	Syntaxin 6, N-terminal	IPR015260	-	-

Full-Lengther Next Prediction

SSRs (tot: 1)

Start position	End position	Sequence	Length
706	722	CTG CTG CTG CTG CTG CT	17

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain