SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22440

Length: 3234 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene22440
CGTCGTGACCTTGGCTGTCACTCAGCTGAGAATTAAGTCTTCTGAATTTTGTTGGGCGTTTGACTTGGATGTCTGAGTTTGATCCAATTTGAGGTTATTGAATTATGATTCTTTGCATTCAATGGATATGCCTACAGAGCATAAATGACAGACCGAGCAGCTCCTCGGGCATCTCCACTCAAGCGTATTCTGGTACAATGTTCTCCTCAGGTTAAGGAATATGGATGCTGTGTGGCAAAAAGAGTTCCACAAGTTGAGCGTGATATGTGTCTAGAGGAGTTCCTGGCATTGAAGACTTGTATGCAGAATGTGTTAAAGAGCAAGCATTAATTAGCATTTTGATTCCAAAGATCTAGAATTCAAGAATGTGGAGGCAATCTCTCTTTTTATCATGATTAAGTGGCTCTCAATTCTAATCTAGAGTATGCTGTCCAAGACTAAACTTCATTATTAACTCAAGAGCTATAGGAGTCGGTTTTACTGTTATTTCGAAGAAACCAGCTCAAGACATGTTTCGACCACAAAGTGGGTCAAGCTCTCGGTCCAGACCAGCTTTAGCTGGGTCTGGTGCTTTATCTCATGTTTATGTTCAAAATCCACCATTGAGATGTAACATTCCTGGTGTTTTGGGTTTGCACTATGATGATGGTAATAAGTTACTGCTTGCTTCGACATCAAATCAGATATTTTCATGGCAAGCAAATCAGTTTACATCTGAGGGTATTCCAAATGTTGTTACAATAAATGAAGGACCTGTTTTATCTATTAGATATTCTTTGGATGGAAAAATTATAGGTGTACAGCGATCTCAACAAGAAGTTGAATTTATCAATCGAGAAACATCCAAAGTATTCAATCTACGGTGCAAGGTTGAATCTGAGTGTATACTGGGCTTCTTTTGGACGGACTGCCCAACATGTGATATAGTACTTGTAAAGACGAGTGGACTTGATCTATATTCATTGCAAGTTCAGTTAAATAGTCTTAAGTTTGTGGAGACAAGACGATTCAATGTCAGCTGGTATGTGTACACACATGAGAGTCGGTTGGTTCTTCTTGCATCTGGAATGCAGTGCAAGACTTTGACTGGATTTCAGTTTTCCGCAGGAGGCATTATCCGTTTGCCAAAATTTGAGGCTGCAATAACTAAAGCTGAGGTGAATAAGAAGCCTGTTTTAGGTCCAGAGGATGTCCAAATAGCTACAATGTATGGGAGAATTTATTGTTTACAGGTTGATCGGGTAGGCATGCAGCTTCACTTGTATCGGTTTTATCGTGATGCTGTTGTGCATCAGGGTTCTTTGCCGATATATTCAACAAAGGTGGCCATCAACGTAGTGGACAATGTACTTCTGGTTCATCAGGTGGATGCAAAAGTAGTTTTGTTGTATGACATATTTGCAGATTCAAAGGCTCCTATATCTGCTCCTCTTCCTCTCTTGGTGAGGGGTCCATTAGGATCTACTGTAATTTCTGCTAGAAACAAAGACAAACAATCAGGCAGTAGCTCCTCTCAATCTGCTCAAGCAGAGACTTTGACTGCAAGTGAAGGCAATGTGTACGGAGATGGGTGGGTCTTCCTCAATCCTGATCTGATATGTGACAATATTCATGGAATTTTATGGAGGGTCCATTTAGACCTAGAGGCTATTGCTGCTAGCAGTTCAGAAGTACCTTCGCTGTTAGCTTTTCTGCAACGGCGTAGACTGGAGGCAGACAAGGCTAAGCAGTTGTCTTTAGCGGTCATGCGGTCCATCATTTTGGAGAGGAGAGCTCTTTCTGTGATTGTGAATGCAATGGATATACTGACAGCTTCATATTCACACGCTATGAAACTGGCAAATTATTTGGCTGGAGCACCTGAAACTGCTGGGTCCAACAGAGCTGTTAGCCAACAGCCTTCAGATTCTCATTTAAATGGGCAAAAAACATTCAAGCTGGATGCTTCTCCAAGTAAGAACGCTGGAGTGGTTGACATGCATGGTAAGGCCACTAAGGCTGCGACTGATGGTACTGAGGTTGAGAAGGAAACTGTTCATGCTGTTATAACTTCAGCCTTGAGGGAATCTTCGAGCAGCTCTTTTGGAGATACTGACTCTCAGGAAAATGTAAACTCTGGCCATGTAAGTGCAAGGCCAGAGGGTAGCTCTTCAACACAACACGTGCTTCCTTCTGATGTAATCAAGGATGATAGCAGGGAGGATAGCAATGTTAAAGCGGAAAGAAGGGCTAGTATTGATTCTGAGAACTCCAGCGCAAGACATGAAAAGGCACTTGTACAATCTGAAAGCAGTGAAATCACTGCACAAGGGCCACTAGAATCAGCCATACCAGACCGACATAGGCCTCAGACTGCTAGCACCATTATTTCACCTGATGAAATATACAACAGTGTATTTGCTGTTGTTGAGGAGGAAATTTCAGGGGACCCAATGTACTTGGTTACACTTATTGTAGAATATTTTCGCAGTGCAGCTGCAGAGAAACTTAAAGTTCCTCCTGGGTTACATGTATTAACAGTACAGCTTCTTGCACGTGATGAATGCTATGTTGAATTAGAACAATTTGTTTTGAACAAGATTGTGGAGCCATCAAAGGAGGTTGCAATGGAGCTTTTGGAAATTGGCTCTTCTCACATACCGACTCGTAAGCTGGGTATCGACATGTTGAGGCAACTCTCATGTCATAGTGAATATGTGTCATTGCTACTTCAAGATGGTCGCTTTATTGAAGCTTTACGATATGTTCGACGAAACAGAGTACTTACCATTCCTCCGGTTTTATTTCTTGAAGCAGCTGTCTCTACAAAGGAATCACAGAAGTTGGCCTCTGTCCTGAGGTTTTGTACAGATTTTGTACCAAATTTTGATCAAACACTCGATTATAGTACATTCTTTACCATTTTAAATGACACGAACAATACCATAGTCACTTGATTTACTTATGTCACTACAGAACAAGTCATCATGCAAGTGAACCTGTCTGTTATAGGCATTTATTCGTATTTAATCAATGCCAGTATGGTGTACTCTATAAAGAAACCTTGTAATGCAATCTAATAATAATCAAACACTTCATTATTTGGTTGCCACTGGTGAGAAGTAGTCAGCTTCTTGTGTATGATTGCGTGCTAGTTTATTACATTCTGAGCATTTAACTTTCTTCCTATTGCAACGGAAGTTAAAATGAAGGACAATATTTCCATCTTGTACTTTAACACAATAAGTGATGCAA

Ace file of the UniGene sp_v2.0_unigene22440 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os10g0400900 protein (Fragment) n=3 Tax=Oryza sativa Japonica Group RepID=Q0IXT3_ORYSJ	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	53%
Blast2go	colon cancer-associated protein mic1-like containing expressed	-	-	67%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Colon cancer-associated Mic1-like	IPR009755	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HLH1

Fln msg: your sequence is longer than subject: 809 - 760

Fln protein: MFRPQSGSSSRSRPALAGSGALSHVYVQNPPLRCNIPGVLGLHYDDGNKLLLASTSNQIFSWQANQFTSEGIPNVVTINEGPVLSIRYSLDGKIIGVQRSQQEVEFINRETSKVFNLRCKVESECILGFFWTDCPTCDIVLVKTSGLDLYSLQVQLNSLKFVETRRFNVSWYVYTHESRLVLLASGMQCKTLTGFQFSAGGIIRLPKFEAAITKAEVNKKPVLGPEDVQIATMYGRIYCLQVDRVGMQLHLYRFYRDAVVHQGSLPIYSTKVAINVVDNVLLVHQVDAKVVLLYDIFADSKAPISAPLPLLVRGPLGSTVISARNKDKQSGSSSSQSAQAETLTASEGNVYGDGWVFLNPDLICDNIHGILWRVHLDLEAIAASSSEVPSLLAFLQRRRLEADKAKQLSLAVMRSIILERRALSVIVNAMDILTASYSHAMKLANYLAGAPETAGSNRAVSQQPSDSHLNGQKTFKLDASPSKNAGVVDMHGKATKAATDGTEVEKETVHAVITSALRESSSSSFGDTDSQENVNSGHVSARPEGSSSTQHVLPSDVIKDDSREDSNVKAERRASIDSENSSARHEKALVQSESSEITAQGPLESAIPDRHRPQTASTIISPDEIYNSVFAVVEEEISGDPMYLVTLIVEYFRSAAAEKLKVPPGLHVLTVQLLARDECYVELEQFVLNKIVEPSKEVAMELLEIGSSHIPTRKLGIDMLRQLSCHSEYVSLLLQDGRFIEALRYVRRNRVLTIPPVLFLEAAVSTKESQKLASVLRFCTDFVPNFDQTLDYSTFFTILNDTNNTIVT*

Protein Length: 810

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTGAGAATTAAGTCTTCTGAATTTTGTTGGGCGTTTGACTTGGATGTCTGAGTTTGATCCAATTTGAGGTTATTGAATTATGATTCTTTGCATTCAATGGATATGCCTACAGAGCATAAATGACAGACCGAGCAGCTCCTCGGGCATCTCCACTCAAGCGTATTCTGGTACAATGTTCTCCTCAGGTTAAGGAATATGGATGCTGTGTGGCAAAAAGAGTTCCACAAGTTGAGCGTGATATGTGTCTAGAGGAGTTCCTGGCATTGAAGACTTGTATGCAGAATGTGTTAAAGAGCAAGCATTAATTAGCATTTTGATTCCAAAGATCTAGAATTCAAGAATGTGGAGGCAATCTCTCTTTTTATCATGATTAAGTGGCTCTCAATTCTAATCTAGAGTATGCTGTCCAAGACTAAACTTCATTATTAACTCAAGAGCTATAGGAGTCGGTTTTACTGTTATTTCGAAGAAACCAGCTCAAGAC_-_ATGTTTCGACCACAAAGTGGGTCAAGCTCTCGGTCCAGACCAGCTTTAGCTGGGTCTGGTGCTTTATCTCATGTTTATGTTCAAAATCCACCATTGAGATGTAACATTCCTGGTGTTTTGGGTTTGCACTATGATGATGGTAATAAGTTACTGCTTGCTTCGACATCAAATCAGATATTTTCATGGCAAGCAAATCAGTTTACATCTGAGGGTATTCCAAATGTTGTTACAATAAATGAAGGACCTGTTTTATCTATTAGATATTCTTTGGATGGAAAAATTATAGGTGTACAGCGATCTCAACAAGAAGTTGAATTTATCAATCGAGAAACATCCAAAGTATTCAATCTACGGTGCAAGGTTGAATCTGAGTGTATACTGGGCTTCTTTTGGACGGACTGCCCAACATGTGATATAGTACTTGTAAAGACGAGTGGACTTGATCTATATTCATTGCAAGTTCAGTTAAATAGTCTTAAGTTTGTGGAGACAAGACGATTCAATGTCAGCTGGTATGTGTACACACATGAGAGTCGGTTGGTTCTTCTTGCATCTGGAATGCAGTGCAAGACTTTGACTGGATTTCAGTTTTCCGCAGGAGGCATTATCCGTTTGCCAAAATTTGAGGCTGCAATAACTAAAGCTGAGGTGAATAAGAAGCCTGTTTTAGGTCCAGAGGATGTCCAAATAGCTACAATGTATGGGAGAATTTATTGTTTACAGGTTGATCGGGTAGGCATGCAGCTTCACTTGTATCGGTTTTATCGTGATGCTGTTGTGCATCAGGGTTCTTTGCCGATATATTCAACAAAGGTGGCCATCAACGTAGTGGACAATGTACTTCTGGTTCATCAGGTGGATGCAAAAGTAGTTTTGTTGTATGACATATTTGCAGATTCAAAGGCTCCTATATCTGCTCCTCTTCCTCTCTTGGTGAGGGGTCCATTAGGATCTACTGTAATTTCTGCTAGAAACAAAGACAAACAATCAGGCAGTAGCTCCTCTCAATCTGCTCAAGCAGAGACTTTGACTGCAAGTGAAGGCAATGTGTACGGAGATGGGTGGGTCTTCCTCAATCCTGATCTGATATGTGACAATATTCATGGAATTTTATGGAGGGTCCATTTAGACCTAGAGGCTATTGCTGCTAGCAGTTCAGAAGTACCTTCGCTGTTAGCTTTTCTGCAACGGCGTAGACTGGAGGCAGACAAGGCTAAGCAGTTGTCTTTAGCGGTCATGCGGTCCATCATTTTGGAGAGGAGAGCTCTTTCTGTGATTGTGAATGCAATGGATATACTGACAGCTTCATATTCACACGCTATGAAACTGGCAAATTATTTGGCTGGAGCACCTGAAACTGCTGGGTCCAACAGAGCTGTTAGCCAACAGCCTTCAGATTCTCATTTAAATGGGCAAAAAACATTCAAGCTGGATGCTTCTCCAAGTAAGAACGCTGGAGTGGTTGACATGCATGGTAAGGCCACTAAGGCTGCGACTGATGGTACTGAGGTTGAGAAGGAAACTGTTCATGCTGTTATAACTTCAGCCTTGAGGGAATCTTCGAGCAGCTCTTTTGGAGATACTGACTCTCAGGAAAATGTAAACTCTGGCCATGTAAGTGCAAGGCCAGAGGGTAGCTCTTCAACACAACACGTGCTTCCTTCTGATGTAATCAAGGATGATAGCAGGGAGGATAGCAATGTTAAAGCGGAAAGAAGGGCTAGTATTGATTCTGAGAACTCCAGCGCAAGACATGAAAAGGCACTTGTACAATCTGAAAGCAGTGAAATCACTGCACAAGGGCCACTAGAATCAGCCATACCAGACCGACATAGGCCTCAGACTGCTAGCACCATTATTTCACCTGATGAAATATACAACAGTGTATTTGCTGTTGTTGAGGAGGAAATTTCAGGGGACCCAATGTACTTGGTTACACTTATTGTAGAATATTTTCGCAGTGCAGCTGCAGAGAAACTTAAAGTTCCTCCTGGGTTACATGTATTAACAGTACAGCTTCTTGCACGTGATGAATGCTATGTTGAATTAGAACAATTTGTTTTGAACAAGATTGTGGAGCCATCAAAGGAGGTTGCAATGGAGCTTTTGGAAATTGGCTCTTCTCACATACCGACTCGTAAGCTGGGTATCGACATGTTGAGGCAACTCTCATGTCATAGTGAATATGTGTCATTGCTACTTCAAGATGGTCGCTTTATTGAAGCTTTACGATATGTTCGACGAAACAGAGTACTTACCATTCCTCCGGTTTTATTTCTTGAAGCAGCTGTCTCTACAAAGGAATCACAGAAGTTGGCCTCTGTCCTGAGGTTTTGTACAGATTTTGTACCAAATTTTGATCAAACACTCGATTATAGTACATTCTTTACCATTTTAAATGACACGAACAATACCATAGTCACTTGA___TTTACTTATGTCACTACAGAACAAGTCATCATGCAAGTGAACCTGTCTGTTATAGGCATTTATTCGTATTTAATCAATGCCAGTATGGTGTACTCTATAAAGAAACCTTGTAATGCAATCTAATAATAATCAAACACTTCATTATTTGGTTGCCACTGGTGAGAAGTAGTCAGCTTCTTGTGTATGATTGCGTGCTAGTTTATTACATTCTGAGCATTTAACTTTCTTCCTATTGCAACGGAAGTTAAAATGAAGGACAATATTTCCATCTTGTACTTTAACACAATAAGTGATGCAA

Fln Alignment:

Contig22440___LSHVYVQNPPLRCNIPGVLGLHYDDGNKLLLASTSNQIFSWQANQFTSEGIPNVVTINEGPVLSIRYSLDGKIIGVQRSQQEVEFINRETSKVFNLRCKVESECILGFFWTDCPTCDIVLVKTSGLDLYSLQVQLNSLKFVETRRFNVSWYVYTHESRLVLLASGMQCKTLTGFQFSAGGIIRLPKFEAAITKAEVNKKPVLGPEDVQIATMYGRIYCLQVDRVGMQLHLYRFYRDAVVHQGSLPIYSTKVAINVVDNVLLVHQVDAKVVLLYDIFADSKAPISAPLPLLVRG-PLGSTVISARNKDKXXXXXXXXXXXAETLTASEGNVYGDGWVFLNPDLICDNIHGILWRVHLDLE---AIAASSSEVPSLLAFLQRRRLEADKAKQLSLAVMRSIILERRALSVIVNAMDILTASYSHAMKLANYLAGAPETAGSNRAVSQQPSDSHLNGQKTFKLDASPSKNAGVVDMHGKATKAATDGTEVEKETVHAVITSALREXXXXSFGDTDSQENV---NSGHVSARPEGSSSTQHVLPSDVIKDDSREDSNVKAERRASIDSENSSARHEKALVQSESSEITAQGPLESAIPDRHRPQTASTIISPDEIYNSVFAVVEEEISGDPMYLVTLIVEYFRSAAAEKLKVPPGLHVLTVQLLARDECYVELEQFVLNKIVEPSKEVAMELLEIGSSHIPTRKLGIDMLRQLSCHSEYVSLLLQDGRFIEALRYVRRNRVLTIPPVLFLEAAVSTKESQKLASVLRFCTDFVPNFDQTLDYSTFFTILNDTNNTI
F6HLH1_______________LSHVYIQHPPLRCSIPGSKGLFYDDGNKLILSPTSDQVFSWKTVPFASHVAPTSDSISEGPVLSIRYSLDSKLLAIQRSNHEIQFWNRETGETFSQRCRSETESILGFFWTDCPKCDIVFVKTSGMDLFSYDSETKSLHLVETKKMNVSWYVYTHESRLILLASGMQCKSFTGFQLSSAGMIRLPKFEMAMAKSEANNKPVLAAEDVHIITVYGRIYCLQVDRVAMLLHSYRFYRDAVVQQGSLPIYSDKIAISVVDNVLLVHQVDAKVVILYDIFADSRAPISAPLPLLLRGFPRASSSSSRTGNKDTDGSEANDRSDHETI------IYGDNWIFLVPDLICDVAKRLLWKIHLDLEASFAISASSSEVPSVLEFLQRRKLEANKAKQLCLAIVRTVILERRPVSMVTRAIDVLVTSYSNSIKTGSYFKGI-------KAEKPPTSDVSNVNPPTSVVDESIRRE----DALGKSIKHGS-ASGVENESIN----------RSPAFSVSDSEENVSFENSNHL------------------------RSLGAKADRENFKVAESSQSEVQKLSLQSQLLG-PSNSPLNANYSENLESQVTSAAISPDEMYSCVFASVEEEMAGDPAYFVTIVIEFLRSANVERIKVHPNIYVLTVQLLARHERYAELGLFIINKILEPSKEVALQLLESGRQNIQTRKLGLDMLRQLSLHHDYVLLLVQDGYYLEALRYARKNKVTTVRPSLFLEAAFASTDPQHLAAVLRFFSDFIPGFKNTADHIAYCRILNEMNSSI

SNPs (tot: 133)

Position	A %	C %	G %	T %	Probability
427		66		33	0.997452
429		66		33	0.997452
466	87	12			0.992554
467	12			87	0.992554
469		12	87		0.992554
470		12		87	0.992554
477			14	85	0.993533
478	14	85			0.993533
479		14		85	0.993533
506		83		16	0.994512
507	83		16		0.994512
510	83		16		0.994512
515		16	83		0.994512
517	16	83			0.994512
518		83	16		0.994512
519	83		16		0.994512
522	16			83	0.994512
523		16		83	0.994512
526	83	16			0.994512
538	80			20	0.995493
539		80	20		0.995493
541			20	80	0.995493
542	80			20	0.995493
543			20	80	0.995493
544	25			75	0.996473
548	25			75	0.996473
550			25	75	0.996473
552	75			25	0.996473
555		25		75	0.996473
626		66	33		0.997452
629			33	66	0.997452
634	66		33		0.997452
637	33			66	0.997452
638	33	66			0.997452
639		66	33		0.997452
640			33	66	0.997452
642		33		66	0.997452
645		33		66	0.997452
1456			80	20	1.0
1457	80			20	1.0
1505	90	10			0.90298
1530		18		81	0.999994
1601	88	11			0.923564
1604			77	22	0.999999
1608		87	12		0.992554
1609		87		12	0.992554
1610			12	87	0.992554
1611	12	87			0.992554
1614			11	88	0.923564
1615	88	11			0.923564
1616	88	11			0.923564
1619			10	90	0.90298
1621		90		10	0.90298
1624		10		90	0.90298
1627	90	10			0.90298
1628			10	90	0.90298
1642	88		11		0.923564
1685	11	88			0.923564
1695	87	12			0.992554
1696	12		87		0.992554
1715	16	83			0.994512
1737		16		83	0.994512
1811	75		25		0.996473
1957	16	83			0.994512
1960		83	16		0.994512
1961	83			16	0.994512
1972		16	83		0.994512
1973	83	16			0.994512
1974		16		83	0.994512
1976		83		16	0.994512
2048	75			25	0.996473
2071	25			75	0.996473
2072	25	75			0.996473
2210		88	11		0.923564
2217		88		11	0.923564
2227	11			88	0.923564
2228		11	88		0.923564
2230	88			11	0.923564
2237	11			88	0.923564
2238	11		88		0.923564
2240		88	11		0.923564
2372		12	87		0.992554
2374	87	12			0.992554
2375	12	87			0.992554
2376		87		12	0.992554
2412	87	12			0.992554
2690	14		85		0.999981
2749			80	20	1.0
2834	78			21	1.0
2836	21	78			1.0
2841		23		76	1.0
2842	23			76	1.0
2845	76		23		1.0
2849		23		76	1.0
2852	7	23		69	1.0
2853	69		23	7	1.0
2854	90	10			0.90298
2856	90			10	0.90298
2857	90			10	0.90298
2962		80		20	0.995493
2963			20	80	0.995493
2964	20	80			0.995493
2965		80	20		0.995493
2968	20	80			0.995493
2969		20		80	0.995493
2972	80	20			0.995493
2977			20	80	0.995493
2978	80		20		0.995493
2986			20	80	0.995493
3003			33	66	0.997452
3004	33			66	0.997452
3005			33	66	0.997452
3008	33	66			0.997452
3011		66	33		0.997452
3012	75	25			0.996473
3015	25		75		0.996473
3016		75	25		0.996473
3017	75		25		0.996473
3020	25	75			0.996473
3021	75	25			0.996473
3022			25	75	0.996473
3024		25		50	0.995533
3025			25	75	0.996473
3038		25	75		0.996473
3042	75			25	0.996473
3046		25		75	0.996473
3047	25		75		0.996473
3048			25	75	0.996473
3153	33	66			0.997452
3154	66		33		0.997452
3155	66	33			0.997452
3159	33			66	0.997452
3160		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain