SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22412

Length: 2086 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene22412
CGTCGTGACCTTGGCTGTCACTCAGGGTTAACACTCCAAGTCAAGGTTGACCTTCGGAGGATCCATAAATAGAGAAAGCCGTCGTGACCTTGGCTGTCACTCAGGCTTCGAATTTGCAAGTGTTTGTTTGCAGGAAATTGAGAGAGGGTTTGGCAAGTTTCTCGTGAGGGATAAAAATAGTGTTTTCGGTTTGTTGGAAGAGGAGAACAAGCGGGCGTTGTTGTCGTTGTTTTTGCTGTTCTTGATGTTGTTTTGGAGAAGCCAAAATGGTTGCAGGAAGAAGTTTGTGTACTGTTGTAGAGGTTGCATACAAGTCTCTGGCTTTAGAGAAGGAGACAGGATGCCAGGTGGATGAACACGATTGCCCGTCGCCAATTGCGATTATTCCCGATTGTTTCGGCCCCGATATAATCTCAGGGTCGTCTCAGACACAGCTGGATTTGAGGACTGCAAGTTTGATTCCAAAGCCCTCTATTGAGAATGGGAAGGAGCAGTTCATGCCAATCATACGGTCTGGTAGTTTTACAAATATTGGTCCCAGGCGGTCCATGGAAGATGAACACATATGTGTTGATGATTTGTCGAAACATCTTGGTACAAAGTTTGAGGGACCAAAACCAAGTGCCTTCTATGGGGTATTTGATGGACACGGGGGTGCCGAGGCAGCCATCTTTATTCGAAACAACCTTCTGAAATTTGTCACCGAAGACGCTGATTTCCCTAGGATTCAGAAAAAAGATGCTGATTTTCAAAGTGCGGCTGAAAAGGTTTTAAGGAATGCATTTCTTGTAGCTGATCTTGCATTGGCTGATGACTCTGATGTTGATAATTCCTGTGGCACAACAGTCTTGACGGCACTAATTGTGGGAAGGTCTCTCGTCGTGGCTAATGCTGGGGACTGTCGGGCAGTGTTGTGTAGGAGGGGGAAAGCAGTGGAAATGTCTAGAGACCATAAACCTGATTGTCTCAGTGAAAGATTGCGGATTGAATCTTTGGGAGGCTTTGTGGATGATGGATATGTAAATGGTTATTTATCAGTTGCTAGAGCGTTAGGTGACTGGGACATGAAATTGCCAAAAGGCTCTTGTAGTCCTCTCAGTGCAGAGCCTGAATTTCGACTGGCAGATCTTACAGAAGAAGATGAATTTTTGATAATTGGTTGTGATGGCATTTGGGATGTTATGTCAAGCGATCACGCAGTCAGCATTGCACGGAAAGAGCTTATGCGGCACAATGATCCGCAGCAGTGTTCCGAGGAGCTTGTTTTAGAGGCTTTGCGGCGCAAGACACTTGACAATCTGACGGTTGTGGTAGTCTGCTTTTCGGCTGAACCTCCACCTCCTCCACCTTGCATCGAGCGCCCCAGGCTCAGATTGTGTAATATATCTGCAGAAGGCATTCGTAACCTGAGGAATTTACTAGACAAGGTGTGAAGGTGGCAGCTATGGACAAACTGGACTGCTCTCAGCGGCGAACATGTCTATGTGCAGTTCACTCGGGACATGAAATTCCTGTTACATATGATATAATAGACGAATGGGTCCTTGATCTTCTGGAAGTGCAATGGTAATAAGACATCAAAAAATGTAATGCATCTCTCATCCAGCACGATATAGTATTACTGGTCATTTTCAAACCATGGCTGGAATCAATTCTAAATTGTGGCAATTATATTTAAAATGGAGGGGACCCATATCACATAATGTTTGCTGCACTGGCCTGTTTTTTAATGACTTGCTACAGGCATGAACAGTTGGACACTATGACTTTCATGAAGACTCTAGATCTCGAAAACCGAGAGCGTCCAGATTCCTCAAATGCTCTGAGAGATACTTTACTGGTTTGGGGGTATTTTGATCCATGGAAATATTTTTGCTGTCGTTGGAACTTGTCTGATACTTATCCTCAGTTTTGCACAGGGATAACAAACATGGAAAATGTAATTTCATTGACAGGGAGTTCTTTATCTCCTAAACTTTTATTACTACTCGATTTATTACAATTGTTTGTAACAATTAATATTATCCACTCTGATGTATTTTTTGTTATGCAGTGCAATAAATGGCGAAAATGTTTTAACATTAGT

Ace file of the UniGene sp_v2.0_unigene22412

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative protein phosphatase 2C 49 [Arabidopsis thaliana] emb\|CAB71886.1\| putative protein [Arabidopsis thaliana] gb\|AAM63159.1\| protein phosphatase-2C [Arabidopsis thaliana] gb\|ABN04763.1\| At3g62260 [Arabidopsis thaliana] dbj\|BAH19574.1\| AT3G62260 [Arabi	-	-	53%
FL-Next	sp=Probable protein phosphatase 2C 2; Oryza sativa subsp. japonica (Rice).	-	-	55%
Blast2go	probable protein phosphatase 2c 49-like	-	-	72%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Galectin, carbohydrate recognition domain	IPR001079	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Glycosyl transferase, family 31	IPR002659	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FYN7

Fln msg:

Fln protein: MVAGRSLCTVVEVAYKSLALEKETGCQVDEHDCPSPIAIIPDCFGPDIISGSSQTQLDLRTASLIPKPSIENGKEQFMPIIRSGSFTNIGPRRSMEDEHICVDDLSKHLGTKFEGPKPSAFYGVFDGHGGAEAAIFIRNNLLKFVTEDADFPRIQKKDADFQSAAEKVLRNAFLVADLALADDSDVDNSCGTTVLTALIVGRSLVVANAGDCRAVLCRRGKAVEMSRDHKPDCLSERLRIESLGGFVDDGYVNGYLSVARALGDWDMKLPKGSCSPLSAEPEFRLADLTEEDEFLIIGCDGIWDVMSSDHAVSIARKELMRHNDPQQCSEELVLEALRRKTLDNLTVVVVCFSAEPPPPPPCIERPRLRLCNISAEGIRNLRNLLDKV*

Protein Length: 390

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGTTAACACTCCAAGTCAAGGTTGACCTTCGGAGGATCCATAAATAGAGAAAGCCGTCGTGACCTTGGCTGTCACTCAGGCTTCGAATTTGCAAGTGTTTGTTTGCAGGAAATTGAGAGAGGGTTTGGCAAGTTTCTCGTGAGGGATAAAAATAGTGTTTTCGGTTTGTTGGAAGAGGAGAACAAGCGGGCGTTGTTGTCGTTGTTTTTGCTGTTCTTGATGTTGTTTTGGAGAAGCCAAA_-_ATGGTTGCAGGAAGAAGTTTGTGTACTGTTGTAGAGGTTGCATACAAGTCTCTGGCTTTAGAGAAGGAGACAGGATGCCAGGTGGATGAACACGATTGCCCGTCGCCAATTGCGATTATTCCCGATTGTTTCGGCCCCGATATAATCTCAGGGTCGTCTCAGACACAGCTGGATTTGAGGACTGCAAGTTTGATTCCAAAGCCCTCTATTGAGAATGGGAAGGAGCAGTTCATGCCAATCATACGGTCTGGTAGTTTTACAAATATTGGTCCCAGGCGGTCCATGGAAGATGAACACATATGTGTTGATGATTTGTCGAAACATCTTGGTACAAAGTTTGAGGGACCAAAACCAAGTGCCTTCTATGGGGTATTTGATGGACACGGGGGTGCCGAGGCAGCCATCTTTATTCGAAACAACCTTCTGAAATTTGTCACCGAAGACGCTGATTTCCCTAGGATTCAGAAAAAAGATGCTGATTTTCAAAGTGCGGCTGAAAAGGTTTTAAGGAATGCATTTCTTGTAGCTGATCTTGCATTGGCTGATGACTCTGATGTTGATAATTCCTGTGGCACAACAGTCTTGACGGCACTAATTGTGGGAAGGTCTCTCGTCGTGGCTAATGCTGGGGACTGTCGGGCAGTGTTGTGTAGGAGGGGGAAAGCAGTGGAAATGTCTAGAGACCATAAACCTGATTGTCTCAGTGAAAGATTGCGGATTGAATCTTTGGGAGGCTTTGTGGATGATGGATATGTAAATGGTTATTTATCAGTTGCTAGAGCGTTAGGTGACTGGGACATGAAATTGCCAAAAGGCTCTTGTAGTCCTCTCAGTGCAGAGCCTGAATTTCGACTGGCAGATCTTACAGAAGAAGATGAATTTTTGATAATTGGTTGTGATGGCATTTGGGATGTTATGTCAAGCGATCACGCAGTCAGCATTGCACGGAAAGAGCTTATGCGGCACAATGATCCGCAGCAGTGTTCCGAGGAGCTTGTTTTAGAGGCTTTGCGGCGCAAGACACTTGACAATCTGACGGTTGTGGTAGTCTGCTTTTCGGCTGAACCTCCACCTCCTCCACCTTGCATCGAGCGCCCCAGGCTCAGATTGTGTAATATATCTGCAGAAGGCATTCGTAACCTGAGGAATTTACTAGACAAGGTGTGA___AGGTGGCAGCTATGGACAAACTGGACTGCTCTCAGCGGCGAACATGTCTATGTGCAGTTCACTCGGGACATGAAATTCCTGTTACATATGATATAATAGACGAATGGGTCCTTGATCTTCTGGAAGTGCAATGGTAATAAGACATCAAAAAATGTAATGCATCTCTCATCCAGCACGATATAGTATTACTGGTCATTTTCAAACCATGGCTGGAATCAATTCTAAATTGTGGCAATTATATTTAAAATGGAGGGGACCCATATCACATAATGTTTGCTGCACTGGCCTGTTTTTTAATGACTTGCTACAGGCATGAACAGTTGGACACTATGACTTTCATGAAGACTCTAGATCTCGAAAACCGAGAGCGTCCAGATTCCTCAAATGCTCTGAGAGATACTTTACTGGTTTGGGGGTATTTTGATCCATGGAAATATTTTTGCTGTCGTTGGAACTTGTCTGATACTTATCCTCAGTTTTGCACAGGGATAACAAACATGGAAAATGTAATTTCATTGACAGGGAGTTCTTTATCTCCTAAACTTTTATTACTACTCGATTTATTACAATTGTTTGTAACAATTAATATTATCCACTCTGATGTATTTTTTGTTATGCAGTGCAATAAATGGCGAAAATGTTTTAACATTAGT

Fln Alignment:

Contig22412___ISGSSQTQLDLRTASLIPKPSIENGKEQFMPIIRSGSFTNIGPRRSMEDEHICVDDLSKHLGTKFEGPKPSAFYGVFDGHGGAEAAIFIRNNLLKFVTEDADFPRIQKKDADFQSAAEKVLRNAFXXXXXXXXXXXXXXNSCGTTVLTALIVGRSLVVANAGDCRAVLCRRGKAVEMSRDHKPDCLSERLRIESLGGFVDDGYVNGYLSVARALGDWDMKLPKGSCSPLSAEPEFRLADLTEEDEFLIIGCDGIWDVMSSDHAVSIARKELMRHNDPQQCSEELVLEALRRKTLDNLTVVVVCFSAEXXXXXXCIERP---RLRLC-NISAEGIRNLRNLLD
Q9FYN7_______________MSPEAASEAAIEVPELMVKAPVES--LQFSPNIRSGSFADIGPRRYMEDEHIRIDDLSGHLGSLLMCPAPNAFYGVFDGHGGPDAAAYMKRHAIRLFFEDSEFPQALEEDESFYESVEKSIHNAFLSADLALADDLAISRSSGTTALAALIFGRQLLVANAGDCRAVLCRKGVAVEMSRDHRPTYDAEHERITECGGYIEDGYLNGVLSVTRALGDWDMKMPQGSRSPLIAEPEFQQTTLTEDDEFLIIGCDGIWDVMSSQHAVTIVRKGLRRHDDPERCARELAMEAKRLQTFDNLTVIVICFGSELGGGSPSSEQAPIRRVRCCKSLSSEALCNLKKWLE

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
82	25			75	0.996473
85	25			75	0.996473
88		75	25		0.996473
91			25	75	0.996473
95		75	25		0.996473
96	25			75	0.996473
97	25		75		0.996473
98			25	75	0.996473
99	25	75			0.996473
101	25	75			0.996473
103		75		25	0.996473
104	75			25	0.996473
223		83		16	0.994512
403		61		38	1.0
608	16		83		0.994512
667	75		25		0.996473
1416		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain