SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22403

Length: 2479 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene22403
CGTCGTGACCTTGGCTGTCACTCAAAATTTCACTACCAACGGCGCAGGCGCTTCGAACCTGCTGGACATGGCATAAGCAACCGGTCGCAGATCCTTTTTCTCTTTTACGCCTCAAGGAAGTCCAGGAGTGTCGACAACTTATTTGCAGGTTTTAATGTAAACCTGAAGCATCCGTTCAGCGCCCCTATTATCTCGTATCTGCTCAAGCAGCGTCGGAATTTAAGAGTTTCAAGCTTTTGAAGGAACCTGCCGGTGTTGAATCGAGGGACTGCGAAATTGTACGTCGTGGACTAATTTCCTGAAGACTAGACATCCTGGCTAGCCTCGTCAATTTCCTCGTTGATATGCAGCCATCGACTTCTATGCTAGGTACCGGACCCATGCAGGGCGTGAGCAGTGTCACGGCTTGTTTAAGCAGAAACCCTCAAGTCAGCCTCCAGGAACAAATTCACAGCCAACAGCACCAAATAAATAACCAGCAACAGCATTTTCTCGCAATTCGACCAAACGAACCAGCCTCATCCGAACATGGATGAATTTCTAGATCAAATGCTCTGCATGCCTCCCTGGTCGGAAGTAGCTGCCGTGAAGTCCGGGCCCTGGGACTACAATGCCACCAACGCTCCACAAGGCAACAATCCCTCAAATAGTAACAACAGTCCCCAGAACTTGCAAAGCAATACCCAGAAATTATTCACAATGTCATTGCTGCCTCCCGGGATAGGAGGCCAGGGCTTGAACTCTCAGGAAAACGACCCGTATCCGTACGACGATTCCCAGTTCCTAGCTAACAGGATAAGGCAGCATCAACTGAGCGGTAATTCTTCGATGAATCAGACGCCAAACCAGGCCTCGCAAGGGATTAATGAAACCAATACGTCTCCGGGCCGATCCATGGTTTTGCAGCTAAGCACAGGAAGTGCAAGCGCTTCACAGCTGCTGGCCTCCATGGGCAATTCGCCTCGCGGCACCGCGGTAATGACGCGGTCGCCCAGTACAGGAGGCAGCTGTAATGGCAGCGACGGAGGAATGCTTCCTCTTCCTCTCAGTCTCGGCCAGGCGGGTAAATCAGGCGACATCAACGAGTCCCGCTCGCGGGATGAAATTGAAGCTTCCTTCAAGTCGGCAAATAATGCCCGAGATTCGAACCTCGGAGGGCTATTTCCGCCGTTCGCTGGATCACCACGGGGAGTTCGACCGACAGGCCAAAACTTCCATACACAGTCCGGACAAGTGCCAATGCAAGTGTATGGTGGAATGCCCCAACCTCAGCATCAGAATCCATCTCCGACCGGAGTTGGTGCTGCACCACCTGTTCGACCTCGAGTAAGGGCACGCCGTGGACAGGCTACAGATCCCCACAGTATTGCAGAAAGATTGCGTCGGGAGAGGATTGCAGAGAGAATGAAGGCTCTGCAAGAACTGGTTCCTAATTCCAATAAGACGGATAAGGCTTCGATGCTGGATGAGATAATTGATTACGTCAAGTTTCTTCAGCTGCAAGTGAAGGTTCTAAGCATGAGTCGACTGGGAGGTGCAGGAGCAGTTGCTCCCCTTGTGGCTGATATACCTGCTGAGGGTGCCAACGCCCCACAAGGTACAAGAACCAACAGTAGCCAGAACTCTTCTCCAGACGGTCTAGCATTAACAGAACGCCAAGTAGCAAAGCTAATGGAGGAAGACATGGGATCAGCCATGCAGTATCTTCAAGGCAAAGGTCTCTGTCTGATGCCCATATCTCTGGCCTCAGCCATTAATAACTCCGGTGCGAGACCCCAGGCTCCATCCACCCCTTCTCTTCAAGGGCTATTGCCACCTAATGCCAACGACAGGCAGGTACTGGAACCCTCGAACTCGGCACTCTCTGTCCTCACATCCACCTCCATGACCATACAGTCATCCATCAGCTCGCCTGGGAGCGGAATAACGGAGCAAGGTGATAATGCACACAAGGCAGGGAACGGAACAAGGAATCCAAAGGATTCGAGAGAAGCCAATTCCGTTACGAAATCCAACGGGATAGGAGGCCCAGCTCTTTCCAAGAACGCCGTTAAAGGAGAGGACGAACCTCAAAGGAGGACGGGCCAGTAAACAGCACCACCTTGCTAACGGAAACTGTATCATACTTCTATTAACGCCAGATTGCATGAAATTGTTCAAGCATACGAAATTTACTTTTCACATGCTTCAACAATTTCTAAATAGTTGCAGTCGCAGTCGCAGTCGCTCTATGGGAGAGCAATCATTCAAAAATCCCCAAAACACACTTCAAATTTTCCTTTCCCCTGAAGTTTGGTGTTTATTTTCATTGAATGGGTAAAAGAATCGAGCAAGTCTATCAAAATAAGGCACGCGCCCCACTTTGATGATGCCTTATTTACATAGACTTACATAAATATGACATTATGTATGCTTGACCCAAGCGCTTTGTTAATCACTACCTAAGTTATATATTAAGATGGATAATAATTATTGCCCC

Ace file of the UniGene sp_v2.0_unigene22403

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BHLH transcription factor PTF1-like protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6EPZ6_ORYSJ	-	-	9.94922e-44	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	transcription factor bhlh66-like	-	-	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Ubiquitin	IPR000626	-	-
Sma3		IPR001092	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	DNA-directed RNA polymerase, subunit 2, domain 6	IPR007120	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-
Sma3	RNA polymerase Rpb2, OB-fold	IPR014724	-	-
Sma3	DNA-directed RNA polymerase, subunit 2	IPR015712	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSU4

Fln msg: your sequence is longer than subject: 521 - 333

Fln protein: MDEFLDQMLCMPPWSEVAAVKSGPWDYNATNAPQGNNPSNSNNSPQNLQSNTQKLFTMSLLPPGIGGQGLNSQENDPYPYDDSQFLANRIRQHQLSGNSSMNQTPNQASQGINETNTSPGRSMVLQLSTGSASASQLLASMGNSPRGTAVMTRSPSTGGSCNGSDGGMLPLPLSLGQAGKSGDINESRSRDEIEASFKSANNARDSNLGGLFPPFAGSPRGVRPTGQNFHTQSGQVPMQVYGGMPQPQHQNPSPTGVGAAPPVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAGAVAPLVADIPAEGANAPQGTRTNSSQNSSPDGLALTERQVAKLMEEDMGSAMQYLQGKGLCLMPISLASAINNSGARPQAPSTPSLQGLLPPNANDRQVLEPSNSALSVLTSTSMTIQSSISSPGSGITEQGDNAHKAGNGTRNPKDSREANSVTKSNGIGGPALSKNAVKGEDEPQRRTGQ*

Protein Length: 522

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATTTCACTACCAACGGCGCAGGCGCTTCGAACCTGCTGGACATGGCATAAGCAACCGGTCGCAGATCCTTTTTCTCTTTTACGCCTCAAGGAAGTCCAGGAGTGTCGACAACTTATTTGCAGGTTTTAATGTAAACCTGAAGCATCCGTTCAGCGCCCCTATTATCTCGTATCTGCTCAAGCAGCGTCGGAATTTAAGAGTTTCAAGCTTTTGAAGGAACCTGCCGGTGTTGAATCGAGGGACTGCGAAATTGTACGTCGTGGACTAATTTCCTGAAGACTAGACATCCTGGCTAGCCTCGTCAATTTCCTCGTTGATATGCAGCCATCGACTTCTATGCTAGGTACCGGACCCATGCAGGGCGTGAGCAGTGTCACGGCTTGTTTAAGCAGAAACCCTCAAGTCAGCCTCCAGGAACAAATTCACAGCCAACAGCACCAAATAAATAACCAGCAACAGCATTTTCTCGCAATTCGACCAAACGAACCAGCCTCATCCGAAC_-_ATGGATGAATTTCTAGATCAAATGCTCTGCATGCCTCCCTGGTCGGAAGTAGCTGCCGTGAAGTCCGGGCCCTGGGACTACAATGCCACCAACGCTCCACAAGGCAACAATCCCTCAAATAGTAACAACAGTCCCCAGAACTTGCAAAGCAATACCCAGAAATTATTCACAATGTCATTGCTGCCTCCCGGGATAGGAGGCCAGGGCTTGAACTCTCAGGAAAACGACCCGTATCCGTACGACGATTCCCAGTTCCTAGCTAACAGGATAAGGCAGCATCAACTGAGCGGTAATTCTTCGATGAATCAGACGCCAAACCAGGCCTCGCAAGGGATTAATGAAACCAATACGTCTCCGGGCCGATCCATGGTTTTGCAGCTAAGCACAGGAAGTGCAAGCGCTTCACAGCTGCTGGCCTCCATGGGCAATTCGCCTCGCGGCACCGCGGTAATGACGCGGTCGCCCAGTACAGGAGGCAGCTGTAATGGCAGCGACGGAGGAATGCTTCCTCTTCCTCTCAGTCTCGGCCAGGCGGGTAAATCAGGCGACATCAACGAGTCCCGCTCGCGGGATGAAATTGAAGCTTCCTTCAAGTCGGCAAATAATGCCCGAGATTCGAACCTCGGAGGGCTATTTCCGCCGTTCGCTGGATCACCACGGGGAGTTCGACCGACAGGCCAAAACTTCCATACACAGTCCGGACAAGTGCCAATGCAAGTGTATGGTGGAATGCCCCAACCTCAGCATCAGAATCCATCTCCGACCGGAGTTGGTGCTGCACCACCTGTTCGACCTCGAGTAAGGGCACGCCGTGGACAGGCTACAGATCCCCACAGTATTGCAGAAAGATTGCGTCGGGAGAGGATTGCAGAGAGAATGAAGGCTCTGCAAGAACTGGTTCCTAATTCCAATAAGACGGATAAGGCTTCGATGCTGGATGAGATAATTGATTACGTCAAGTTTCTTCAGCTGCAAGTGAAGGTTCTAAGCATGAGTCGACTGGGAGGTGCAGGAGCAGTTGCTCCCCTTGTGGCTGATATACCTGCTGAGGGTGCCAACGCCCCACAAGGTACAAGAACCAACAGTAGCCAGAACTCTTCTCCAGACGGTCTAGCATTAACAGAACGCCAAGTAGCAAAGCTAATGGAGGAAGACATGGGATCAGCCATGCAGTATCTTCAAGGCAAAGGTCTCTGTCTGATGCCCATATCTCTGGCCTCAGCCATTAATAACTCCGGTGCGAGACCCCAGGCTCCATCCACCCCTTCTCTTCAAGGGCTATTGCCACCTAATGCCAACGACAGGCAGGTACTGGAACCCTCGAACTCGGCACTCTCTGTCCTCACATCCACCTCCATGACCATACAGTCATCCATCAGCTCGCCTGGGAGCGGAATAACGGAGCAAGGTGATAATGCACACAAGGCAGGGAACGGAACAAGGAATCCAAAGGATTCGAGAGAAGCCAATTCCGTTACGAAATCCAACGGGATAGGAGGCCCAGCTCTTTCCAAGAACGCCGTTAAAGGAGAGGACGAACCTCAAAGGAGGACGGGCCAGTAA___ACAGCACCACCTTGCTAACGGAAACTGTATCATACTTCTATTAACGCCAGATTGCATGAAATTGTTCAAGCATACGAAATTTACTTTTCACATGCTTCAACAATTTCTAAATAGTTGCAGTCGCAGTCGCAGTCGCTCTATGGGAGAGCAATCATTCAAAAATCCCCAAAACACACTTCAAATTTTCCTTTCCCCTGAAGTTTGGTGTTTATTTTCATTGAATGGGTAAAAGAATCGAGCAAGTCTATCAAAATAAGGCACGCGCCCCACTTTGATGATGCCTTATTTACATAGACTTACATAAATATGACATTATGTATGCTTGACCCAAGCGCTTTGTTAATCACTACCTAAGTTATATATTAAGATGGATAATAATTATTGCCCC

Fln Alignment:

Contig22403___QATDPHSXXXXXXXXXXXXXMKALQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLS
A9NSU4_______________RAAEVHNLSEKRRRNRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKKLQLQVQMLS

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
27	73			20	1.0
83		7	88		0.999079
86		92	7		0.999664
89	88			11	1.0
92		7		92	0.999664
94	3	88		7	0.999079
96		34	3	61	1.0
98		7		92	0.999664
99	7			92	0.999664
396	90			10	0.90298
1475	75		25		0.996473
1492	80		20		0.995493
1493	80			20	0.995493
1495	20			80	0.995493
1496		20		80	0.995493
1501		80	20		0.995493
1507		80		20	0.995493
1508	80	20			0.995493
1510		20	80		0.995493
1512		20	80		0.995493
1864			85	14	0.993533
1865		85	14		0.993533
1868		14		85	0.993533
1869		85		14	0.993533
1884		87	12		0.992554
1885	87			12	0.992554
1887		87	12		0.992554
1891	87			12	0.992554
1894	87		12		0.992554
1896		87		12	0.992554
1897	87		12		0.992554
1902		12	87		0.992554
2031	16			83	0.994512
2108		88	11		0.923564
2110		11		88	0.923564
2114	88		11		0.923564
2117		11	88		0.923564
2118			88	11	0.923564
2119	88			11	0.923564
2120	88		11		0.923564
2121	88		11		0.923564
2182		14		85	0.993533
2470	40			60	1.0
2482	33	66			0.997452
2483		66		33	0.997452
2484	33	33		33	0.997753

SSRs (tot: 1)

Start position	End position	Sequence	Length
2208	2227	GCAGTC GCAGTC GCAGTC GC	20

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain