SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22320

Length: 1210 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene22320

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Isopentenyl diphosphate isomerase n=1 Tax=Pinus taeda RepID=C8CS12_PINTA	-	-	94%
FL-Next	tr=Isopentenyl diphosphate isomerase; Pinus taeda (Loblolly pine).	-	-	73%
Blast2go	isopentenyl diphosphate isomerase	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	0.0	-
Sma3	Isopentenyl-diphosphate delta-isomerase, type 1	IPR011876	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C8CS12

Fln msg: Overlapping hits, possible frame ERROR between 466 and 457, atg_distance in limit (1-15): atg_distance = 2,

Fln protein: MPFAVTSTLPSIAMVPRTVPVFVGCPTTLISPSITKSCSSAISWKLKSASSAISLSRTCHSGNPVVRNLIGSAAKMEATMENATMNEVQRRLMLEDECILVDEEDHVIGHDSKYNCHLMEKIESENLLHRAFSVFLFNTKYELLLQQRSAxxxxxPLVWTNTCGRHPLYTQSELIEENSLGVRNAAQRKLYDELGIAAEDVPVDQFVPLGRILYKAPSDGKWGEHELDYLVFIVRDVAVHPNPEEVADVKYVSKEQLKELIRKADAGEDGIKLSPWFRLAVDNFLFDWWNKAENGTLAEAVDMKTIHKLT*

Protein Length: 312

Fln nts: TGCT_-_ATGCCTTTTGCTGTAACCAGTACTTTGCCATCTATTGCCATGGTTCCCAGGACGGTACCAGTCTTTGTGGGTTGTCCAACCACTTTAATCTCTCCCTCAATCACTAAGAGCTGCTCCTCTGCTATCTCCTGGAAGCTCAAATCTGCTTCTTCTGCAATTAGTCTGAGCAGAACTTGCCACTCTGGGAACCCAGTTGTTAGAAATTTGATTGGATCAGCTGCTAAGATGGAGGCCACAATGGAGAATGCGACCATGAATGAAGTTCAAAGGCGACTCATGCTCGAAGATGAGTGCATTTTGGTGGATGAAGAGGATCATGTCATTGGGCATGACTCAAAATACAATTGTCACTTGATGGAGAAAATAGAGTCAGAGAATCTATTGCATAGAGCTTTCAGTGTGTTTCTATTCAATACAAAATATGAATTGCTTCTTCAGCAACGTTCTGCAxxxxxxxxxxxxxxxCCTTTGGTATGGACAAATACCTGCGGCAGACATCCGCTCTACACGCAGTCTGAGCTCATTGAGGAGAACAGTTTAGGGGTCAGAAATGCAGCCCAAAGGAAGCTGTATGATGAACTAGGCATTGCTGCAGAAGATGTTCCAGTCGATCAGTTTGTGCCACTTGGTCGCATACTTTACAAGGCTCCTTCTGATGGAAAGTGGGGGGAGCATGAATTGGATTACCTTGTTTTCATTGTTCGGGATGTTGCCGTGCATCCCAATCCAGAAGAGGTTGCCGATGTTAAGTACGTAAGCAAAGAGCAGTTGAAGGAGCTCATAAGGAAAGCAGATGCTGGTGAAGATGGAATTAAGCTTTCACCTTGGTTCCGTCTGGCTGTCGACAACTTCTTGTTTGATTGGTGGAATAAGGCTGAAAATGGTACTCTGGCAGAAGCAGTTGATATGAAAACCATACATAAATTGACTTAG___AATGGTTGCGAAGCATCCAAATCCTTTTTATAGACTCCAGGATTTGAAATCTATTCAACAATAATGGCATATTTCAGTTAAGGTGAAATGTACACGTATAACAGCCTGTGGGATATTCAGCATTACTTAATGTCTATTTTTATTTCTATCCTTTATTTTCATTGGTTTGAAAATAGCATGCATATTATGTCACAAGCAACCATACTCTCGAGTCAATATTTATATGCCTATATTGTTACCTTTGTTTCTTGTTATATAACTGTATTTTCCTGCC

Fln Alignment:

Contig22320___VTSTLPSIAMVPRTVPVFVGCPTTLISPSITKSCXXXXXXXXXXXXXXXXXXRTCHSGNPVVRNLIGSAAKMEATMENATMNEVQRRLMLEDECILVDEEDHVIGHDSKYNCHLMEKIESENLLHRAFSVFLFNTKYELLLQQRSATxxxIPLVWTNTCGRHPLYTQSELIEENSLGVRNAAQRKLYDELGIAAEDVPVDQFVPLGRILYKAPSDGKWGEHELDYLVFIVRDVAVHPNPEEVADVKYVSKEQLKELIRKADAGEDGIKLSPWFRLAVDNFLFDWWNKAENGTLAEAVDMKTIHKLT
C8CS12_______________LANTWASSAIVSRRVSLFVACSTTVVSRSFSKTCSGAIPRKPKSAYPAITGSRTCFSQNPIARNLIGSASNMGATVEDTTMDAVQRRLMFEDECILVDEEDHVIGHDSKYNCHLMEKIESENLLHRAFSVFLFNTKYELLLQQRSATxxxFPLVWTNTCCSHPLYRESELIEENNLGVRNAAQRKLYDELGIAAEDVPVDQFVPLGRILYKAPSDGKWGEHELDYLVFIVRDVAVHPNPEEVADVKYVSKEQLKELIRKADAGEDGIKLSPWFRLAVDNFLFDWWNKAENGTLAEAVDMKTIHKLT

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
675	10		90		0.90298
902		11	88		0.923564
906	11	88			0.923564
947	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain